Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C02
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    31   0.045
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         30   0.10 
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   1.3  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   1.7  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   9.1  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 31.5 bits (68), Expect = 0.045
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 68  IFGKILRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIPRK 190
           IF KI++ +IP   + E    + F D+ P +  H LVIP++
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKE 44



 Score = 27.5 bits (58), Expect = 0.74
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = +3

Query: 198 HSSRLADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVTDGKNGAQSVYHLHIHIL 368
           H++++ + +DE     +L + +KV   +G +   + ++  +G+   Q V H+H HI+
Sbjct: 45  HAAKMHELSDESC-ADILPLVKKVTKAIGPEN--YNVLQNNGRIAHQFVDHVHFHII 98


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 95  IPANFIYEDEQCVXFNDVNPQAPTHVLVIPRKPIPQL 205
           + +   Y  +    F ++ P  P HVLVIP++ +P+L
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRL 48



 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 207 RLADDTDEQLLGHLLIVARKVAAQLG--LDKTGFRLVVTDGKNGAQSVYHLHIHIL 368
           RL D T  +L   L    RKV   +      +   + + DG +  Q+V H+H+HI+
Sbjct: 47  RLKDLTPSELTD-LFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTVPHVHVHII 101


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 183 QGSLFHSSRLADDTDEQLLGHLLIVARKVAA 275
           QG++F S  + D ++E L+GHLL  A  + A
Sbjct: 193 QGNVF-SPEILDVSEEDLIGHLLSAASIITA 222


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 255 VARKVAAQLGLDKTGFRLVVTDGKNGAQSVYHLHIHIL 368
           V  +V  Q  +DK   ++ V    +   S YHLH+HIL
Sbjct: 215 VLTEVPKQFSVDKNQLKMFV----HYLPSYYHLHVHIL 248


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 188 SLVSPIHE*ELVGSHH*MXRIVRLRK*NLQGFLYVIFSQRLYHRLERQFVRV 33
           +LV  I+   LV  HH +     +R   LQ  LY+   +RLY   + ++V V
Sbjct: 149 TLVYDIYTLCLVSWHHHVFS--HIRDSLLQNLLYMFTKKRLYEPTDMKYVEV 198


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 183 GITNT*VGACGFTSLNXTHCSSS*MKFAGISLRNIFPK-IVSPPGAAVCASFTSP 22
           G+T+T     G  SL+    +SS    AGIS+ ++F K   +   A V  S ++P
Sbjct: 201 GVTSTTGAPSGKASLSRAASNSSTSARAGISVDSLFGKRSAAQAMATVVPSVSTP 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,376
Number of Sequences: 5004
Number of extensions: 28462
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)