Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C02
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 74 3e-14
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 62 2e-10
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 40 9e-04
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701 31 0.40
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 29 1.6
04_01_0303 + 4132988-4133184,4133701-4134202,4134261-4134638,413... 28 2.8
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 27 3.7
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 27 4.9
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 27 6.5
04_03_0680 - 18613901-18614528,18614766-18615265 27 6.5
04_01_0426 - 5620980-5621114,5622675-5622886,5623290-5623412,562... 27 6.5
01_07_0102 - 41093042-41093231,41093385-41093473,41093730-410939... 26 8.6
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 74.1 bits (174), Expect = 3e-14
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +2
Query: 38 AQTAAPGGDTIFGKILRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIPR 187
A TA GG TIF KI+ KEIP+N +YEDE+ + F D+NPQAP HVLVIP+
Sbjct: 36 AATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK 85
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 61.7 bits (143), Expect = 2e-10
Identities = 21/43 (48%), Positives = 35/43 (81%)
Frame = +2
Query: 59 GDTIFGKILRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIPR 187
G +F KI++KEIP+ +++DE+ + F D+NPQAPTH+++IP+
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPK 234
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +3
Query: 213 ADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVTDGKNGA 335
A++ ++LG+LL VA+ VA Q GL+ G+R+V+ DG +G+
Sbjct: 245 AEERHVEILGYLLYVAKVVAKQEGLE-DGYRIVINDGPSGS 284
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 39.5 bits (88), Expect = 9e-04
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 56 GGDTIFGKILRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIPRKPIPQL 205
G +F +I++ PA +YED+ C+ D P + H L+IP++ P L
Sbjct: 70 GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSL 119
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 300 FRLVVTDGKNGAQSVYHLHIHILXGR 377
F ++V +GK Q ++H H+H++ R
Sbjct: 150 FNVLVNNGKVAGQVIFHTHVHLIPRR 175
>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
Length = 204
Score = 30.7 bits (66), Expect = 0.40
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 208 RELWNRLPWYH----QYMSRSLWVHIIEXYALFVFVNEICRDFFT*YFPKD 68
REL+ LP YM R L +H + Y L + IC FF+ + PK+
Sbjct: 127 RELYGMLPVTAYLAVSYMDRFLSLHRLPAYTLIIECTNICMCFFSGFNPKE 177
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 298 PVLSRPSWAATLRATIRRCPNNCSSVSSA 212
P L R A LRA + CP CSS SS+
Sbjct: 328 PYLVRAVLATPLRAFVPSCPRVCSSASSS 356
>04_01_0303 +
4132988-4133184,4133701-4134202,4134261-4134638,
4134657-4135301
Length = 573
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 310 TRRKPVLSRPSWAATLRATIRRCPNNCSSVSSARRELWNR-LPWY 179
T RKPV R +WA T+ + + N + + WN+ P+Y
Sbjct: 94 TARKPVRRRCTWATTITGIVHKEVKNNNGYRPQGGQGWNQPRPYY 138
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 259 ATIRRCPNNCSSVSSARRELWNR 191
A+ RRCP +CSS +++RR W R
Sbjct: 333 ASRRRCPASCSSPAASRR--WRR 353
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 143 DVNPQAPTHVLVIPR 187
D +P+APTHV ++PR
Sbjct: 35 DTSPRAPTHVALLPR 49
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 280 SWAATLRATIRRCPNNCSSVSSAR-RELW 197
+W TLRA + R P N SV AR ELW
Sbjct: 758 AWNITLRACMHRLPTN-KSVRGARWPELW 785
>04_03_0680 - 18613901-18614528,18614766-18615265
Length = 375
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 231 QLLGHLLIVARKVAAQLGLDKTGFRLVVTDGK 326
++LG L R + GL K GF +VV DGK
Sbjct: 107 EVLGSLEQQNRMLPPMPGLTKAGFSVVVLDGK 138
>04_01_0426 -
5620980-5621114,5622675-5622886,5623290-5623412,
5623705-5623759,5624530-5624676,5624841-5624915,
5624987-5625046,5625334-5625519
Length = 330
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 322 PSVTTRRKPVLSRPSWAATLRATIRRCPNNCSSVSSARRELWNRLPWY 179
P++ R P L+RPSW A + T+ P+ + RR+ +P Y
Sbjct: 45 PTIRNRLVPALNRPSWRAVTK-TVYASPSRV-NFHLDRRKAVETVPAY 90
>01_07_0102 -
41093042-41093231,41093385-41093473,41093730-41093924,
41095173-41095334,41095412-41095484,41095691-41095758,
41095847-41095894,41096012-41096101,41096204-41096286,
41097000-41097066
Length = 354
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 181 YHQYMSRSLWVHIIEXYALFVFVNEICRDFFT*YFPKDCITAWSGSLCEFHL 26
YH + R +WVH + +L V +IC D C + SGS + H+
Sbjct: 256 YHHF-PREVWVHNVGLGSLVYSVEQICDDSGE---DPSCCRSVSGSSVQDHI 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,918,181
Number of Sequences: 37544
Number of extensions: 204649
Number of successful extensions: 563
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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