Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C02
(379 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36) 93 7e-20
SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 5e-07
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08) 39 0.002
SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32) 32 0.13
SB_12247| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.8) 27 3.8
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06) 27 6.7
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9) 27 6.7
>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
Length = 432
Score = 93.1 bits (221), Expect = 7e-20
Identities = 39/51 (76%), Positives = 46/51 (90%)
Frame = +2
Query: 56 GGDTIFGKILRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIPRKPIPQLS 208
GGDTIFGKI+RKEIPA ++ED+QC+ F D+NPQAPTHVLVIP+KPI QLS
Sbjct: 3 GGDTIFGKIIRKEIPAEILHEDDQCLAFRDINPQAPTHVLVIPKKPIRQLS 53
Score = 62.9 bits (146), Expect = 8e-11
Identities = 28/43 (65%), Positives = 34/43 (79%)
Frame = +3
Query: 210 LADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVTDGKNGAQ 338
+ADD+DEQLLG LLIVARKVAA L G+R+++ DGKNG Q
Sbjct: 54 MADDSDEQLLGRLLIVARKVAAMQNLANDGYRIIINDGKNGGQ 96
>SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 50.4 bits (115), Expect = 5e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +2
Query: 5 FLNMADGEVKLAQTAAPGGDTIFGKILRKEIPANFIYEDEQ 127
F MA E K AQ+A PGGDTIF +I+R ++PA FI+ED++
Sbjct: 43 FSKMASEEEK-AQSAVPGGDTIFSRIIRGDVPATFIHEDDK 82
>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
Length = 492
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Frame = +2
Query: 26 EVKLAQTAAP--GGDTIFGKILRKEIPANFIYEDEQ 127
EV+ A+ AA G TIF KIL KEIPA+ IYED++
Sbjct: 51 EVEKAKEAAKTKGEPTIFDKILSKEIPADIIYEDDK 86
>SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)
Length = 161
Score = 32.3 bits (70), Expect = 0.13
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 207 RLADDTDEQLLGHLLIVARKVAAQLGLD--KTGFRLVVTDGKNGAQSVYHLHIHIL 368
R D T +++ L I ++++A + + T + + DG QSV H+H+HIL
Sbjct: 51 RFVDLTQDEV-SDLFISSQRIAGVVEREFGATSLTISIQDGPEAGQSVQHVHVHIL 105
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 71 FGKILRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIP 184
FG I+ K P+ Y + F ++ P P HVLV P
Sbjct: 10 FGHIILK--PSVVFYRSNLSIGFVNIKPVLPGHVLVSP 45
>SB_12247| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.8)
Length = 213
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 247 RCPNNCSSVSSARRELW 197
+CP+ C+ V S RR LW
Sbjct: 142 KCPSFCADVQSERRSLW 158
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 247 RCPNNCSSVSSARRELW 197
+CP+ C+ V S RR LW
Sbjct: 2903 KCPSFCADVQSERRSLW 2919
>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 323 KEWRPKRLPPSHSYP 367
+E +PK LPPSHS P
Sbjct: 39 EETKPKNLPPSHSIP 53
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 106 ICRDFFT*YFPKDCITAWSGSLCEFHLTVRHV 11
+C+D F Y +C +A+SG CEF ++ V
Sbjct: 3930 VCKDSFGSY-SCNCSSAYSGKHCEFGCNIKKV 3960
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 26.6 bits (56), Expect = 6.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 69 SLGKYYVKKSLQISFTKTNNAXHSMM*THKLLLM----YW*YQGSLFHSSRLADDTDE 230
++ K Y + SL + + +++ H TH L+L Y + F +S+ ADDTDE
Sbjct: 694 AIDKAYSRDSLNLPESPRHSSVHRPTYTHHLVLFLVVPYSIRRHYRFVNSKTADDTDE 751
>SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)
Length = 324
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 343 TLWAPFFPSVTTRRKPVLSRPSW 275
TL+ ++P VT R +LSR SW
Sbjct: 298 TLYREYYPWVTEARARLLSRASW 320
>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
Length = 870
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 83 LRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIPRKP 193
L++++ E + C NDV P+H V PR P
Sbjct: 290 LKRKVNEKLHRESDDCAHNNDVISSRPSHEGVEPRDP 326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,876
Number of Sequences: 59808
Number of extensions: 226057
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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