Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C02
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    70   6e-13
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    43   8e-05
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    43   8e-05
U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    31   0.36 

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 69.7 bits (163), Expect = 6e-13
 Identities = 29/48 (60%), Positives = 39/48 (81%)
 Frame = +2

Query: 62  DTIFGKILRKEIPANFIYEDEQCVXFNDVNPQAPTHVLVIPRKPIPQL 205
           DT+FGKI+RKEIPA  I+ED++ + F+DV+PQAP H LVIP++ I  L
Sbjct: 20  DTLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDML 67



 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 31/55 (56%), Positives = 43/55 (78%)
 Frame = +3

Query: 213 ADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVTDGKNGAQSVYHLHIHILXGR 377
           A D+D  L+G L++ A KVA QLG+   G+R+VV +GK+GAQSV+HLH+H+L GR
Sbjct: 70  AVDSDAALIGKLMVTASKVAKQLGM-ANGYRVVVNNGKDGAQSVFHLHLHVLGGR 123


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +3

Query: 207 RLADDTDEQLLGHLLIVARKVAAQLGL--DKTGFRLVVTDGKNGAQSVYHLHIHILXGR 377
           RL D TD +    L IVA+KV A L    + T   + V DGK+  Q+V H+HIHIL  R
Sbjct: 342 RLTDLTDAET-ADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 77  KILRKEIPANFI-YEDEQCVXFNDVNPQAPTHVLVIPRKPIPQLS 208
           K  R  IPA+ I Y       F ++ P    HVLV P++ +P+L+
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLT 344


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +3

Query: 207 RLADDTDEQLLGHLLIVARKVAAQLGL--DKTGFRLVVTDGKNGAQSVYHLHIHILXGR 377
           RL D TD +    L IVA+KV A L    + T   + V DGK+  Q+V H+HIHIL  R
Sbjct: 342 RLTDLTDAET-ADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 77  KILRKEIPANFI-YEDEQCVXFNDVNPQAPTHVLVIPRKPIPQLS 208
           K  R  IPA+ I Y       F ++ P    HVLV P++ +P+L+
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLT 344


>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 116 EDEQCVXFNDVNPQAPTHVLVIPRKPI 196
           E++ CV  ND+ P+A  H LV+ ++ I
Sbjct: 27  ENKSCVVINDIKPKAKNHYLVLSKQHI 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,164
Number of Sequences: 27780
Number of extensions: 164720
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)