Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B23
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 199 3e-52
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 30 0.31
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 29 0.41
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.9
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 26 3.8
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.9
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 8.9
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 199 bits (485), Expect = 3e-52
Identities = 97/185 (52%), Positives = 133/185 (71%), Gaps = 2/185 (1%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 207
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 208 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 387
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRS TLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 388 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREV 567
++AIL D+VFP EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183
Query: 568 TFEFP 582
TFEFP
Sbjct: 184 TFEFP 188
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 29.9 bits (64), Expect = 0.31
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 283 HVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSVYDAILXDLVFPAEIVGKRIRVKLDG 462
H V V D+ + P N+Q R +L+ + D + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 463 SQLIKVHLD-KNQQTTIEHKV 522
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 29.5 bits (63), Expect = 0.41
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 373 TLTSVYDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYXK 549
+L + YD + DL ++ +GK+ ++ ++L VHL + TIE + F Q+V +
Sbjct: 566 SLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQ 622
Query: 550 LTGREVTFEFP 582
T +F+ P
Sbjct: 623 STKSTASFQLP 633
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 326 LGLGRILRSPTKTTCLPLNFFSSSRTS 246
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 2.9
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 8/172 (4%)
Frame = +1
Query: 94 LVELETN--SDLKAQLRELYIT-KAKEIELHNKKSII--IYVPMPKLKAFQKIQIRLVRE 258
L+E+E+ S L ++ L + K E E++N + I + +L+ + + I +
Sbjct: 875 LIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEFDRLEREKSVAITAINH 934
Query: 259 LEKK---FSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSVYDAILXDLVFPAEI 429
LEK+ G+ F I S R +Q S+ AI ++ +
Sbjct: 935 LEKENDWIDGQKQHFGKQGTIFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG 994
Query: 430 VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFPE 585
V K+ KL S + +H DK + +D F+ + T REV F E
Sbjct: 995 VEKK-EAKLR-SMIKTIHRDKKKIQDTVKSIDRFKRSALEKTWREVNSSFGE 1044
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 299 ETVRSCLSPATKPVLLTNKRGHAQ 370
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 196 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 288
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 19 STMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 177
ST++ K++ AS E F + Q + + + KA+ L KE+ LH
Sbjct: 124 STLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 575 SKVTSRPVSXLYTDWKVSTLCSIVVCWFLSKCTLMSCE 462
SK +S + W+ S L +++ W S CT SCE
Sbjct: 343 SKEQQNKISGFSSIWR-SCLEPLIILWPRSLCTEESCE 379
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 503 VCWFLSKCTLMSCEPSNLTLMR 438
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,881
Number of Sequences: 5004
Number of extensions: 44271
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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