Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B21
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    66   2e-12
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    66   2e-12
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.4  
SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 34/60 (56%), Positives = 38/60 (63%)
 Frame = +2

Query: 260 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIQYNRRFVNVVQTFGRRRGPNSNS 439
           GKVHGSLARAGKVK QTPKVE         GRA + + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 34/60 (56%), Positives = 38/60 (63%)
 Frame = +2

Query: 260 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIQYNRRFVNVVQTFGRRRGPNSNS 439
           GKVHGSLARAGKVK QTPKVE         GRA + + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 470 YFCILFTYKSMNWSW 426
           YFC+++T  S N+SW
Sbjct: 748 YFCVVYTGGSSNFSW 762


>SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 325 TTKKEEEDWPC*AYNSVQQKICQRCADLRTSSRTQLQFIDL*VNK 459
           TT K +ED  C       + + QRC D+    RTQL  + +  N+
Sbjct: 2   TTLKVDEDLECALMEQFIEALHQRCTDI---PRTQLCVLAISFNR 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,749
Number of Sequences: 5004
Number of extensions: 30238
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)