Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B21
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            78   3e-15
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    78   3e-15
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            78   3e-15
At3g26200.1 68416.m03269 cytochrome P450 71B22, putative (CYP71B...    29   2.2  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   5.0  
At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing ...    27   8.8  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 43/59 (72%)
 Frame = +2

Query: 260 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIQYNRRFVNVVQTFGRRRGPNSN 436
           GKVHGSLARAGKV+GQTPKV          GRA + +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 43/59 (72%)
 Frame = +2

Query: 260 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIQYNRRFVNVVQTFGRRRGPNSN 436
           GKVHGSLARAGKV+GQTPKV          GRA + +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 43/59 (72%)
 Frame = +2

Query: 260 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIQYNRRFVNVVQTFGRRRGPNSN 436
           GKVHGSLARAGKV+GQTPKV          GRA + +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At3g26200.1 68416.m03269 cytochrome P450 71B22, putative (CYP71B22)
           Identical to cytochrome P450 71B22
           (SP:Q9LTM1)[Arabidopsis thaliana];contains Pfam profile:
           PF00067 cytochrome P450
          Length = 500

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -1

Query: 169 SKVFITNCSKS--TNAFLDLTNGLLAIDVQDVCRLPSDMQLHSC 44
           S+V +   SKS  T   +DL   L +     VCRL      H C
Sbjct: 148 SEVLVNKLSKSAETRTMVDLRKALFSYTASIVCRLAFGQNFHEC 191


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 59   HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 157
            H+R QS      N   S   +K+R  TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417


>At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing
           protein identical to H-protein promoter binding
           factor-2a GI:3386546 from [Arabidopsis thaliana]
          Length = 448

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 295 SQRTNPQSGKTTKKEEEDWPC*AYNSVQQKIC 390
           +Q+T P  GKT KK  +  PC    S++ K C
Sbjct: 93  NQQTTPD-GKTLKKPTKILPCPRCKSMETKFC 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,622,683
Number of Sequences: 28952
Number of extensions: 164909
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)