Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B20
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 108 6e-25
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 108 8e-25
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 26 5.3
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 7.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.3
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 9.3
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 9.3
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 108 bits (260), Expect = 6e-25
Identities = 54/109 (49%), Positives = 64/109 (58%)
Frame = +2
Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
+L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD D
Sbjct: 16 ILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDR 75
Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
AK V M SE LIKQIPR +G
Sbjct: 76 AKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
Score = 93.9 bits (223), Expect = 2e-20
Identities = 44/72 (61%), Positives = 54/72 (75%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPGL+KAGKFP +SH + + I EVK TIKFQ+ KVLCL V VGHVDM ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177
Query: 591 LAQNVHLSINFL 626
LA N+ L+INFL
Sbjct: 178 LAANLSLAINFL 189
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 108 bits (259), Expect = 8e-25
Identities = 54/109 (49%), Positives = 64/109 (58%)
Frame = +2
Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
+L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD D
Sbjct: 16 ILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDR 75
Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
AK V M SE LIKQIPR +G
Sbjct: 76 AKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
Score = 91.1 bits (216), Expect = 1e-19
Identities = 41/72 (56%), Positives = 54/72 (75%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPGL+KAGKFP +SH + + I EVK TIKFQ+ KVLCL V VGHV+M+ ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177
Query: 591 LAQNVHLSINFL 626
L N+ L++NFL
Sbjct: 178 LIANIMLAVNFL 189
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 480 ESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDELAQNVHLSINFL 626
E + + G F + GHV T ELA+NV + F+
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFV 224
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 370 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 269
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 205 GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 104
G L LW IV+ T L + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 98 NAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 208
N +++SS K NF +TV + +YD P+ D + G
Sbjct: 941 NVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 284 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEAL 150
P H A LQE A AA+ L+ ++NA G +S D +AL
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL 360
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 589 SSGVMSTWPTXTERHNTXFIWNLMVPLTSSXLCVMDSWW 473
SSGV P + F++ PLT + SWW
Sbjct: 101 SSGVKRAMPFRVLKKMKSFLFKQNKPLTVDNVTAFFSWW 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,557
Number of Sequences: 5004
Number of extensions: 47287
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -