Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B20
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 112 2e-25
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 112 2e-25
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 111 3e-25
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 111 5e-25
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 36 0.036
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 30 1.4
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 4.1
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 28 7.2
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 28 7.2
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 7.2
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 112 bits (270), Expect = 2e-25
Identities = 56/109 (51%), Positives = 69/109 (63%)
Frame = +2
Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +E
Sbjct: 34 VVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEE 93
Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
A+ + + M SE++IKQIPR +G
Sbjct: 94 AEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 142
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/72 (47%), Positives = 50/72 (69%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPG KFP L++HQES+ ++E K T+KFQ+ KVLC+ V VG++ M +
Sbjct: 136 QIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 190
Query: 591 LAQNVHLSINFL 626
+ QN+ +S+NFL
Sbjct: 191 IQQNIQMSVNFL 202
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 112 bits (270), Expect = 2e-25
Identities = 53/109 (48%), Positives = 70/109 (64%)
Frame = +2
Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
+ S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +E
Sbjct: 16 ITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEE 75
Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
A+ + + M SE++IKQIPR +G
Sbjct: 76 AEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Score = 73.7 bits (173), Expect = 1e-13
Identities = 31/63 (49%), Positives = 46/63 (73%)
Frame = +3
Query: 438 LNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDELAQNVHLSI 617
++K GKFP L++HQES+ ++E K T+KFQ+ KVLC+ V VG+ M ++ QNV +S+
Sbjct: 149 VSKRGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSV 208
Query: 618 NFL 626
NFL
Sbjct: 209 NFL 211
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 111 bits (268), Expect = 3e-25
Identities = 55/109 (50%), Positives = 68/109 (62%)
Frame = +2
Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +E
Sbjct: 16 VVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEE 75
Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
A+ + + M SE++IKQIPR +G
Sbjct: 76 AEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/72 (47%), Positives = 50/72 (69%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPG KFP L++HQES+ ++E K T+KFQ+ KVLC+ V VG++ M +
Sbjct: 118 QIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 172
Query: 591 LAQNVHLSINFL 626
+ QN+ +S+NFL
Sbjct: 173 IQQNIQMSVNFL 184
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 111 bits (267), Expect = 5e-25
Identities = 52/109 (47%), Positives = 70/109 (64%)
Frame = +2
Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
+ S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK++VC+LGD QH +E
Sbjct: 16 IANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKLKVCMLGDAQHVEE 75
Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
A+ + + M SE++IKQIPR +G
Sbjct: 76 AEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Score = 74.1 bits (174), Expect = 8e-14
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPG KFP L++HQES+ ++E K T+KFQ+ KVLC+ V VG+ M +
Sbjct: 118 QIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQ 172
Query: 591 LAQNVHLSINFL 626
+ QNV +S+NFL
Sbjct: 173 IFQNVQMSVNFL 184
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 35.5 bits (78), Expect = 0.036
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 289
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 101 AVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVCVLGDQQH 274
+ LQS K K R +E + D + K + +K + PK +VCV D +
Sbjct: 263 STLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVCVPIDPNN 322
Query: 275 CDEAKTLNVPCM 310
CD+ VP +
Sbjct: 323 CDDFDPTTVPTL 334
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 212 QCRRNACPSVGHSSSDQFEALQSPKS 135
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -3
Query: 540 PXSFGT*WFP*LHQXCASWTPGGREDQGIYQLCSNRDPTK 421
P F WFP +H S R Q I+ +C N+ P K
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK-PNK 531
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 572 HMANXYRKTQHLXHLELNGSLDFINXVRHGLLVGEKTREFT 450
H+ N Y K +H H LN L LL K REF+
Sbjct: 837 HILNIYAKARHFSHNVLNMLLGLTGTGSSQLLSQPKAREFS 877
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 245 AFSAAVCILALQCRRNACPSVGH 177
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,609,593
Number of Sequences: 37544
Number of extensions: 319621
Number of successful extensions: 674
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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