Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B20
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)               60   1e-09
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)                 31   1.1  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   7.4  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)            27   9.8  

>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
          Length = 81

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/44 (56%), Positives = 34/44 (77%)
 Frame = +3

Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKV 542
           + P +LGPGLNKAGKFP  ++H E+M   I++V+ TIKFQM K+
Sbjct: 34  QIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQMKKI 77


>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
          Length = 342

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = -2

Query: 328 FQSLSIHTWHIQGFSLVTMLLVSKNA----NLHFRPRYVF*LYSAGETLVLLWVIVLQTN 161
           + S  + TW +   S +T+  +S        LH R + +F +  A   L+++W+I L  N
Sbjct: 100 YMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQMFTMKRAAMALIMIWLISLSLN 159

Query: 160 -LKLYSLQKVTFLV 122
            ++L  L+ + + +
Sbjct: 160 VIRLLLLESLFWCI 173


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 304 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 125
           W I    LV  L+ + N +   R ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 296 WFIWTAVLVDALIQANNGSWRRRAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 355

Query: 124 V 122
           +
Sbjct: 356 L 356


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 596 SKLIRSHVHMANXYRKTQHLXHLELNGSLDFINXVR-HGL-LVGEKTREFTS 447
           +K I   +H+ + YR   H+ HL    +LD I   R  G+ L  E T  + S
Sbjct: 169 NKAIEMVIHLCDHYRVPCHIVHLSSGSALDSIRSARSSGIPLTVETTHHYLS 220


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 615 WKDAHSEQAHQESCPH 568
           WK  H+ Q  QESCPH
Sbjct: 110 WKWIHAHQTAQESCPH 125


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 155 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 277
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 304 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 125
           W I    LV  L+ + N +   + ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 395 WFIWFAVLVDALIQANNGSWRRQAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 454

Query: 124 VLRG 113
           +  G
Sbjct: 455 LAVG 458


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 155 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 277
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


>SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)
          Length = 167

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 596 SECASFHQLPXCHCS 640
           S CA++H LP  HCS
Sbjct: 82  SHCATYHTLPISHCS 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,299
Number of Sequences: 59808
Number of extensions: 372722
Number of successful extensions: 738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)