Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B20
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   117   8e-27
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   100   1e-21
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   100   1e-21
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  117 bits (281), Expect = 8e-27
 Identities = 57/109 (52%), Positives = 68/109 (62%)
 Frame = +2

Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
           VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DE
Sbjct: 16  VLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDE 75

Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
           A   ++P M                           SESLIKQIPR +G
Sbjct: 76  AAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILG 124



 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/72 (61%), Positives = 56/72 (77%)
 Frame = +3

Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
           + P +LGPGLNKAGKFP +++H ES+    DE++ T+KFQM KVLCLSV VGHV +T +E
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177

Query: 591 LAQNVHLSINFL 626
           L  N+ LSINFL
Sbjct: 178 LVSNISLSINFL 189


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/72 (61%), Positives = 56/72 (77%)
 Frame = +3

Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
           + P +LGPGLNKAGKFP +++H ES+    DE++ T+KFQM KVLCLSV VGHV +T +E
Sbjct: 88  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147

Query: 591 LAQNVHLSINFL 626
           L  N+ LSINFL
Sbjct: 148 LVSNISLSINFL 159



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +2

Query: 170 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 349
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 350 XXXXXXXXXXXXXXSESLIKQIPRFVG 430
                         SESLIKQIPR +G
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILG 94


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/72 (61%), Positives = 56/72 (77%)
 Frame = +3

Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
           + P +LGPGLNKAGKFP +++H ES+    DE++ T+KFQM KVLCLSV VGHV +T +E
Sbjct: 57  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116

Query: 591 LAQNVHLSINFL 626
           L  N+ LSINFL
Sbjct: 117 LVSNISLSINFL 128



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 24/63 (38%), Positives = 28/63 (44%)
 Frame = +2

Query: 242 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 421
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 422 FVG 430
            +G
Sbjct: 61  ILG 63


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 119 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 229
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 21  SVVIGGSLTNKMSSKVSR*HALRAA*MPFFNPLR 122
           SV I  SL NK     S    +R A +PF  PLR
Sbjct: 224 SVSISSSLVNKNKKAASEQGGIRGALVPFDEPLR 257


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 21  SVVIGGSLTNKMSSKVSR*HALRAA*MPFFNPLR 122
           SV I  SL NK     S    +R A +PF  PLR
Sbjct: 224 SVSISSSLVNKNKKAASEQGGIRGALVPFDEPLR 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,249
Number of Sequences: 27780
Number of extensions: 281389
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)