Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B20
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 116 2e-26
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 116 2e-26
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 113 7e-26
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 110 9e-25
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.65
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 31 0.86
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.5
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.0
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.0
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.0
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.0
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.0
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 27 8.0
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 27 8.0
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 116 bits (278), Expect = 2e-26
Identities = 56/105 (53%), Positives = 70/105 (66%)
Frame = +2
Query: 116 SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 295
S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH +EA+ +
Sbjct: 20 SEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKM 79
Query: 296 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
+ M SES+IKQIPR +G
Sbjct: 80 GLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLG 124
Score = 95.1 bits (226), Expect = 4e-20
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPGLNKAGKFP L+SHQES+ ++E K T+KFQ+ KVLC+ V VG++ M +
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 177
Query: 591 LAQNVHLSINFL 626
L QNV +S+NFL
Sbjct: 178 LFQNVQMSVNFL 189
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 116 bits (278), Expect = 2e-26
Identities = 56/105 (53%), Positives = 70/105 (66%)
Frame = +2
Query: 116 SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 295
S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH +EA+ +
Sbjct: 20 SEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKM 79
Query: 296 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
+ M SES+IKQIPR +G
Sbjct: 80 GLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLG 124
Score = 95.1 bits (226), Expect = 4e-20
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPGLNKAGKFP L+SHQES+ ++E K T+KFQ+ KVLC+ V VG++ M +
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 177
Query: 591 LAQNVHLSINFL 626
L QNV +S+NFL
Sbjct: 178 LFQNVQMSVNFL 189
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 113 bits (273), Expect = 7e-26
Identities = 55/105 (52%), Positives = 69/105 (65%)
Frame = +2
Query: 116 SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 295
S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH +EA+ +
Sbjct: 20 SEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKM 79
Query: 296 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
+ M SES+IKQIPR +G
Sbjct: 80 GLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLG 124
Score = 94.7 bits (225), Expect = 5e-20
Identities = 41/72 (56%), Positives = 55/72 (76%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPGLNKAGKFP L+SHQES+ ++E K T+KFQ+ KVLC+ V VG++ M +
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 177
Query: 591 LAQNVHLSINFL 626
+ QNV +S+NFL
Sbjct: 178 IFQNVQMSVNFL 189
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 110 bits (264), Expect = 9e-25
Identities = 52/109 (47%), Positives = 67/109 (61%)
Frame = +2
Query: 104 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
+ + K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRPKM++C+LGD QH +E
Sbjct: 17 ITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEE 76
Query: 284 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 430
A+ + + M SES+IKQIPR +G
Sbjct: 77 AEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLG 125
Score = 94.7 bits (225), Expect = 5e-20
Identities = 41/72 (56%), Positives = 55/72 (76%)
Frame = +3
Query: 411 RFPVLLGPGLNKAGKFPGLLSHQESMTHXIDEVKGTIKFQMXKVLCLSVXVGHVDMTPDE 590
+ P LLGPGLNKAGKFP L+SHQES+ ++E K T+KFQ+ KVLC+ V VG++ M +
Sbjct: 119 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 178
Query: 591 LAQNVHLSINFL 626
+ QNV +S+NFL
Sbjct: 179 IFQNVQMSVNFL 190
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 140 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 253
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 107 LQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVCVLGDQQH 274
LQS ++K R +E + D + K+ + +K + PK +VCV D +
Sbjct: 297 LQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHLLKAPFCVHPKTGRVCVPIDPNN 356
Query: 275 CDEAKTLNVPCM 310
CDE L VP +
Sbjct: 357 CDEFDPLAVPTL 368
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 240 FGRGMYFSFTVPEKRLSFC 184
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 568 WPTXTERHNTXFIWN-LMVPLTSSXLC 491
WPT T R + F W+ + V ++ S LC
Sbjct: 284 WPTTTSRRSLLFTWSCVFVVVSKSRLC 310
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 568 WPTXTERHNTXFIWN-LMVPLTSSXLC 491
WPT T R + F W+ + V ++ S LC
Sbjct: 436 WPTTTSRRSLLFTWSCVFVVVSKSRLC 462
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 568 WPTXTERHNTXFIWN-LMVPLTSSXLC 491
WPT T R + F W+ + V ++ S LC
Sbjct: 360 WPTTTSRRSLLFTWSCVFVVVSKSRLC 386
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 568 WPTXTERHNTXFIWN-LMVPLTSSXLC 491
WPT T R + F W+ + V ++ S LC
Sbjct: 436 WPTTTSRRSLLFTWSCVFVVVSKSRLC 462
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 568 WPTXTERHNTXFIWN-LMVPLTSSXLC 491
WPT T R + F W+ + V ++ S LC
Sbjct: 360 WPTTTSRRSLLFTWSCVFVVVSKSRLC 386
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 438 LNKAGKFPGLL--SHQESMTHXIDEVK-GTIKFQMXKVLCLSVXVGHVDMTPDELAQNVH 608
LN G P S + +T + + K G KF+M K L V +G + + + L +NV
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358
Query: 609 LSINFL 626
+N L
Sbjct: 359 AFMNAL 364
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 98 NAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 199
N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 245 NPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,403
Number of Sequences: 28952
Number of extensions: 260934
Number of successful extensions: 576
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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