BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP02_F_B19 (612 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 107 2e-24 SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 27 1.6 SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.1 SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.8 SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 27 2.8 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.7 SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 6.5 SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 6.5 >SPAC1F12.02c |p23fy||translationally controlled tumor protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 168 Score = 107 bits (256), Expect = 2e-24 Identities = 60/132 (45%), Positives = 82/132 (62%) Frame = +2 Query: 203 DIQIEGFNPSAEEADEGTDSAVESGVDIXLNHRLXETYAFGDKKSYTLYLKDYMKKLVXK 382 D+ I G NPSAE+A+E + E+ ++ + RL T +F DKKSY Y+K YMK + + Sbjct: 42 DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98 Query: 383 LEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXDFDGTQIPIM 562 L+E P++V VF+ N +K IL FK+ F+ GESMD D MV +M Y + DG P M Sbjct: 99 LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156 Query: 563 MFFKHGLQQEKF 598 +FFK GL EKF Sbjct: 157 IFFKDGLVSEKF 168 Score = 50.0 bits (114), Expect = 3e-07 Identities = 20/40 (50%), Positives = 30/40 (75%) Frame = +1 Query: 82 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 201 M +YKD+I+GDE+ SD Y +K VD+++YE ++VT QG Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQG 40 >SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 27.5 bits (58), Expect = 1.6 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Frame = -1 Query: 225 LKPSIWISALCSRHQPTGHFVNNFI--DQFHFVSVREHLITSDNVLIDLHFDGLEAIKNN 52 LK +ISA+ +P G +N+ D H +R + D+ L + +E Sbjct: 223 LKTQAYISAMAQAERPKGDILNDLFPSDMAHRFLIRRN-AKLDDKLTYVEKQIIEKCTAR 281 Query: 51 KNRKNGFSPQ 22 K R FSPQ Sbjct: 282 KERLANFSPQ 291 >SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 654 Score = 27.1 bits (57), Expect = 2.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 141 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQT 19 +F + + L T + LI + +E+IK KNR +GF T Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYT 543 >SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1367 Score = 26.6 bits (56), Expect = 2.8 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -2 Query: 119 ISSPVIMSL*IFILMDWRRLKII 51 ISSP I + IFILM+ RL +I Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242 >SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 26.6 bits (56), Expect = 2.8 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +2 Query: 281 DIXLNHRLXETYAFGDKKSYTLYLKDYMKKLVXKLEEKAPDQVEVFKT 424 ++ LN +L E F ++K T+YLK + L K + PD VE T Sbjct: 91 EVSLN-KLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 26.2 bits (55), Expect = 3.7 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%) Frame = -2 Query: 554 VFAYHQSLYIPSWQPC-HHN 498 V A+ Q L++P W PC HN Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355 >SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces pombe|chr 1|||Manual Length = 481 Score = 25.4 bits (53), Expect = 6.5 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -3 Query: 478 ELKFLKPAEDVFHYFVHVCFKYFNLVR 398 + FLKP ++ YF+ + +Y +L+R Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201 >SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 675 Score = 25.4 bits (53), Expect = 6.5 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -3 Query: 298 VVQXYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 191 V++ +NS LDG + + S R +T LD+S ++ Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,358,674 Number of Sequences: 5004 Number of extensions: 44953 Number of successful extensions: 129 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 128 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 267622334 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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