Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B19
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   107   2e-24
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    27   1.6  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   2.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   6.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   6.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  107 bits (256), Expect = 2e-24
 Identities = 60/132 (45%), Positives = 82/132 (62%)
 Frame = +2

Query: 203 DIQIEGFNPSAEEADEGTDSAVESGVDIXLNHRLXETYAFGDKKSYTLYLKDYMKKLVXK 382
           D+ I G NPSAE+A+E  +   E+  ++  + RL  T +F DKKSY  Y+K YMK +  +
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98

Query: 383 LEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXDFDGTQIPIM 562
           L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M Y + DG   P M
Sbjct: 99  LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156

Query: 563 MFFKHGLQQEKF 598
           +FFK GL  EKF
Sbjct: 157 IFFKDGLVSEKF 168



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +1

Query: 82  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 201
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -1

Query: 225 LKPSIWISALCSRHQPTGHFVNNFI--DQFHFVSVREHLITSDNVLIDLHFDGLEAIKNN 52
           LK   +ISA+    +P G  +N+    D  H   +R +    D+ L  +    +E     
Sbjct: 223 LKTQAYISAMAQAERPKGDILNDLFPSDMAHRFLIRRN-AKLDDKLTYVEKQIIEKCTAR 281

Query: 51  KNRKNGFSPQ 22
           K R   FSPQ
Sbjct: 282 KERLANFSPQ 291


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 141 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQT 19
           +F  + + L T +  LI   +  +E+IK  KNR +GF   T
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYT 543


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 119  ISSPVIMSL*IFILMDWRRLKII 51
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 281 DIXLNHRLXETYAFGDKKSYTLYLKDYMKKLVXKLEEKAPDQVEVFKT 424
           ++ LN +L E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 91  EVSLN-KLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 554 VFAYHQSLYIPSWQPC-HHN 498
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 478 ELKFLKPAEDVFHYFVHVCFKYFNLVR 398
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 298 VVQXYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 191
           V++  +NS LDG +  +    S R +T  LD+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,674
Number of Sequences: 5004
Number of extensions: 44953
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)