Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B19
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 88 4e-18
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.24
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 29 2.9
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 6.7
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 28 6.7
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 28 6.7
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 8.9
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930... 27 8.9
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 88.2 bits (209), Expect = 4e-18
Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Frame = +2
Query: 182 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLXETYAFGDKKSYTLYLK 355
W + D+ I G NPSAE DEG D VDI RL E F DKK + ++K
Sbjct: 35 WVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMK 92
Query: 356 DYMKKLVXKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXD 535
Y+K L KL+ ++ E FK N+ K +LG+ K+LQFF GESM DG + Y
Sbjct: 93 RYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK- 148
Query: 536 FDGTQIPIMMFFKHGLQQEK 595
DG P ++F HGL++ K
Sbjct: 149 -DGATDPTFLYFSHGLKEVK 167
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/38 (34%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +1
Query: 82 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTR 192
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V +
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQ 38
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -3
Query: 526 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 392
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 191 EHRADIQIEGFNPSAEEADEGTDSAVESGVDIXLNHRLXETYAFGDKK 334
+ + + I N S EE +E ++A VD+ LN E +G+KK
Sbjct: 706 QEKFSVSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 551 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 465
F YH +Y+ SW C H N ++ Q + +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 323 GDKKSYTL-YLKDYMKKLVXK-LEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 496
G +K TL L++Y+ +V L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 497 D 499
+
Sbjct: 1195 E 1195
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 579 PCL-KNIMIGICVPSKSXYSIMATMPSQSMDSPV 481
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 347 YLKDYMKKLVXKLEEKAPDQVEVFKTNMNKVMKDILGR 460
YL+D ++ KL EK D E+ + + + M ++LG+
Sbjct: 253 YLEDSKNEVYMKLAEKRVDCQELSEADFEQAMLEVLGK 290
>06_01_1128 +
9300144-9300273,9300340-9300472,9300585-9300656,
9300783-9300926,9301453-9301524,9301584-9301677,
9301782-9301928
Length = 263
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 29 EKPFFRFLLFLIASNPS 79
E PFF FLL L++S+PS
Sbjct: 2 EAPFFFFLLLLVSSSPS 18
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,979
Number of Sequences: 37544
Number of extensions: 273164
Number of successful extensions: 616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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