Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B18
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   128   2e-30
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    59   2e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     57   9e-09
04_04_0303 + 24269467-24270741                                         31   0.38 
08_01_0212 - 1680199-1680240,1680661-1680723,1681620-1681729,168...    29   2.0  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   6.1  
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   6.1  
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    27   6.1  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  128 bits (309), Expect = 2e-30
 Identities = 56/78 (71%), Positives = 63/78 (80%)
 Frame = +2

Query: 47  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 226
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 227 QPTGGRAXLTEGCSFXRK 280
           QPTGG+A LTEGCSF RK
Sbjct: 67  QPTGGKARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = +2

Query: 47  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 184
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +2

Query: 47  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 163
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +2

Query: 44  AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 223
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 224 CQPTGGRA 247
           C  TG  A
Sbjct: 198 CSATGAGA 205


>08_01_0212 -
           1680199-1680240,1680661-1680723,1681620-1681729,
           1681869-1682101,1683000-1683092,1683895-1683974,
           1685148-1685156,1685243-1685245
          Length = 210

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 137 VKCPGCYKITTVFSHA---QRVVVCAGCSTILCQPTGGRAXLTEGCS 268
           V CPGC  +T V   A      ++C+GC T+L    G        C+
Sbjct: 86  VCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGASNIRCPSCN 132


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 182 AQRVVVCAGCSTILCQPTGGRAXLTEGCS 268
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 152 CYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 256
           CYKI+ ++SH Q ++    C  IL +PTG R   T
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRRIPKT 125


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 26  AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 181
           AV   L   L+  + ASERRK K+  L    N   + +     YK   V SH
Sbjct: 51  AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,842
Number of Sequences: 37544
Number of extensions: 203322
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)