Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B18
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D) 134 4e-32
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden... 132 2e-31
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A) 126 8e-30
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ... 31 0.32
At2g44870.1 68415.m05586 expressed protein 30 0.73
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l... 27 6.8
At3g56410.2 68416.m06274 expressed protein 27 9.0
At3g56410.1 68416.m06273 expressed protein 27 9.0
At1g79670.2 68414.m09292 wall-associated kinase, putative simila... 27 9.0
>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
Length = 84
Score = 134 bits (323), Expect = 4e-32
Identities = 57/78 (73%), Positives = 64/78 (82%)
Frame = +2
Query: 47 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 226
IDLLHP P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC C T+LC
Sbjct: 7 IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66
Query: 227 QPTGGRAXLTEGCSFXRK 280
QPTGG+A L EGCSF +K
Sbjct: 67 QPTGGKARLQEGCSFRKK 84
>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
identical to cDNA ribosomal protein S27 (ARS27A)
GI:4193381
Length = 86
Score = 132 bits (318), Expect = 2e-31
Identities = 58/78 (74%), Positives = 64/78 (82%)
Frame = +2
Query: 47 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 226
IDLL+P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC C TILC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66
Query: 227 QPTGGRAXLTEGCSFXRK 280
QPTGG+A LTEGCSF RK
Sbjct: 67 QPTGGKAKLTEGCSFRRK 84
>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
Length = 84
Score = 126 bits (304), Expect = 8e-30
Identities = 54/78 (69%), Positives = 63/78 (80%)
Frame = +2
Query: 47 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 226
IDLL+P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VV+C C T+LC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66
Query: 227 QPTGGRAXLTEGCSFXRK 280
PTGG+A LTEGCSF +K
Sbjct: 67 TPTGGKAKLTEGCSFRKK 84
>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa] and damage-specific DNA binding protein
1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
CPSF A subunit region
Length = 1088
Score = 31.5 bits (68), Expect = 0.32
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = +2
Query: 11 RLCIKAVTMPLAIDLLHPSPASERRKHKLKRLVPHPN-----SYFMDVKCPGCYKITTVF 175
R+C + T AI L P++E + RL+ + SY +D GC ++ F
Sbjct: 717 RICHQEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSF 776
Query: 176 SHAQRVVVCAGCSTIL---CQPTGGR 244
+ + V C G + +L +PT GR
Sbjct: 777 TDDKNVYYCVGTAYVLPEENEPTKGR 802
>At2g44870.1 68415.m05586 expressed protein
Length = 248
Score = 30.3 bits (65), Expect = 0.73
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 119 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 238
N++ + +CP C + + +++ C GC I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212
>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 556
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 166 CNLVTARALNIHEIRVRMWH*PLKL 92
C++ A LNIH++ +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 101 RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 223
R VP +S V+CP C+K+ A C GC +IL
Sbjct: 55 RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 94
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 101 RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 223
R VP +S V+CP C+K+ A C GC +IL
Sbjct: 8 RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 47
>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
to wall-associated kinase 4 GI:3355308 from [Arabidopsis
thaliana]; isoform contains non-consensus AT-acceptor
splice site.
Length = 714
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 12 GCALKL*PCRSQLICCILPLRRRGGNISLSG*CHILTLISWMLSALAVTRLQQF 173
GC K+ R Q+I + L GGN + G C + L + S VT +QF
Sbjct: 145 GCQAKIPADRPQVIG--VDLESSGGNTTQGGNCKVAFLTNETYSPANVTEPEQF 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,821,085
Number of Sequences: 28952
Number of extensions: 155367
Number of successful extensions: 381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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