Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B17
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   182   4e-47
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   182   4e-47
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   2.1  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   4.9  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   6.5  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   6.5  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  182 bits (442), Expect = 4e-47
 Identities = 85/131 (64%), Positives = 101/131 (77%)
 Frame = +3

Query: 57  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 236
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 237 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAH 416
             E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DS           I+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 417 RGMRHYWGLRV 449
           RG+RH   LRV
Sbjct: 121 RGLRHALDLRV 131


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  182 bits (442), Expect = 4e-47
 Identities = 85/131 (64%), Positives = 101/131 (77%)
 Frame = +3

Query: 57  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 236
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 237 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAH 416
             E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DS           I+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 417 RGMRHYWGLRV 449
           RG+RH   LRV
Sbjct: 121 RGLRHALDLRV 131


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 387 NXHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 286
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 120 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 212
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 286 YCXGFDMIVIIFSTSXSVHSPARLSRSMSAFLRTMLEYLR 167
           YC  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 58  YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 353 LLQLGFKTP*XFGEAQXDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 496
           L  L FK+       + D   +R AT +  S  W A+  YWQ     W
Sbjct: 43  LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 116 DVRIHDTKNMLKFVWNDQRHFG*VSNQRSQTQQQGKR 6
           D  + +  + +KF WN       VSN +S+  +  K+
Sbjct: 147 DKAVENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,922
Number of Sequences: 5004
Number of extensions: 40234
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)