Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B17
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 177 6e-45
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 166 1e-41
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 164 3e-41
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 54 7e-08
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 30 1.2
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.1
03_05_0830 + 28034179-28035492 28 3.7
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 28 3.7
07_03_1085 - 23851852-23853165 28 5.0
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 5.0
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.5
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 27 8.7
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 177 bits (430), Expect = 6e-45
Identities = 74/125 (59%), Positives = 101/125 (80%)
Frame = +3
Query: 75 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEK 254
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T E+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 255 IITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAHRGMRHY 434
++T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+ LD IR HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 435 WGLRV 449
WGLRV
Sbjct: 123 WGLRV 127
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 166 bits (403), Expect = 1e-41
Identities = 78/147 (53%), Positives = 105/147 (71%), Gaps = 16/147 (10%)
Frame = +3
Query: 57 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 221
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 222 -----------AGECTEXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 368
AGE T E+E+++T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 369 SXXXXXXXXXXXIRAHRGMRHYWGLRV 449
IR HRG+RHYWGLRV
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRV 147
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 164 bits (399), Expect = 3e-41
Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 18/149 (12%)
Frame = +3
Query: 57 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 221
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 222 -------------AGECTEXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSN 362
AGE T E+E+++T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 363 LDSXXXXXXXXXXXIRAHRGMRHYWGLRV 449
LD IR HRG+RHYWGLRV
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRV 149
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 54.0 bits (124), Expect = 7e-08
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 300 WFL-NRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAHRGMRHYWGLRV 449
W L R+KD DG++SQ+ S+ LD IR HRG+RHYWGLRV
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 391 RGSXRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 501
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 388 WRGSXRFALTEGCDITGAFVCVVSTLRLLAGEEELL 495
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>03_05_0830 + 28034179-28035492
Length = 437
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 79 LSGMTSDILVKFLTNVPKHNSRGNE 5
LSG T +IL KF ++PK + RG +
Sbjct: 160 LSGNTREILHKFTVDLPKKHGRGGQ 184
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 239 FCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIHDTKNMLKFVWNDQR 60
F F V F + N+G+ P S ++ I+V + NML F+ ++
Sbjct: 111 FIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINVTLSIVGNMLTFMVGSKQ 170
Query: 59 HFG*VSNQRSQTQQQGK 9
F SQTQ QGK
Sbjct: 171 AFEVSLADVSQTQMQGK 187
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 79 LSGMTSDILVKFLTNVPKHNSRGNE 5
LSG T ++L KF ++PK + RG +
Sbjct: 160 LSGNTREVLHKFTVDLPKKHGRGGQ 184
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 202 SAFLRTMLEYLRPTPLIAVIANIT 131
S+FL TM EY+R P A +AN T
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKT 278
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 140 CDDGYQRCWPEVLQHCSQKSR 202
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 165 GRRYSNIV--LKKADIDLDKRAGECTEXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGK 338
G+ + N++ LK D DL E K+ +MS P K+ W + D+ DGK
Sbjct: 514 GKPWRNVLEHLKIQDTDLWSSTNEDNCLWNAKLFPVMSLPETLKVGMWLMGSTCDL-DGK 572
Query: 339 YSQL 350
+ L
Sbjct: 573 VASL 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,248
Number of Sequences: 37544
Number of extensions: 257348
Number of successful extensions: 587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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