Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B17
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              210   7e-55
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)                       28   3.8  
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 27   6.7  
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  210 bits (512), Expect = 7e-55
 Identities = 94/131 (71%), Positives = 111/131 (84%)
 Frame = +3

Query: 57  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 236
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60

Query: 237 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAH 416
           E EVE+++TIM NP QYKIPDWFLNRQKD  DGKYSQ+ ++ LD+           IRAH
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAH 120

Query: 417 RGMRHYWGLRV 449
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/34 (82%), Positives = 34/34 (100%)
 Frame = +3

Query: 57  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 158
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
          Length = 410

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 230 FASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIHDTKNMLKFVW----NDQ 63
           + +T+ + +    E  VG+   N F +R+R H  SF    +  ++  + K++W    ND 
Sbjct: 313 YQATVTRKDKNTSETYVGLTE-NAFKTRYRNHTASFR-HAKHRNSTELSKYIWSLKDNDI 370

Query: 62  RHF 54
            HF
Sbjct: 371 EHF 373


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 247 TSXSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 137
           T  ++HS  + ++++  F+ + +E  RPT L  ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862


>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1164

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 79   LSGMTSDILVKFLTNVPKHNSRGNE 5
            L G T D+L KF  ++PK + RG +
Sbjct: 938  LCGNTRDVLHKFTVDLPKKHGRGGQ 962


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,750
Number of Sequences: 59808
Number of extensions: 299636
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)