Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B17
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.79 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.7  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 288 KIPDWFLNRQKDIVD 332
           KI  WFL++ K+I+D
Sbjct: 275 KIDKWFLHKMKNIID 289


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -1

Query: 295 GILYCXGFDMIVIIFSTSXSVHSPARLSRSMSAFLRTMLEYLRPTPLI 152
           G +   G  M+V IF ++ S+ +P+ L     A    ++ +    P++
Sbjct: 63  GFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMV 110


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 132 PFVCHRCSYS 103
           PF C +CSYS
Sbjct: 16  PFKCEKCSYS 25


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 295 GILYCXGFDMIVIIFSTSXSVHSPARL 215
           G +   G  M+V IF ++ S+ +P+ L
Sbjct: 29  GFVSVMGNGMVVYIFLSTKSLRTPSNL 55


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 162 VGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITI 266
           +G+R S  V         K A   T  E+EKI T+
Sbjct: 3   LGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTV 37


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 210 DQCRLF*EQCWS 175
           D+C    EQCWS
Sbjct: 829 DECWRLMEQCWS 840


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 210 DQCRLF*EQCWS 175
           D+C    EQCWS
Sbjct: 867 DECWRLMEQCWS 878


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 83  STYSSYHEYEHRW 121
           +TY+   EY+H W
Sbjct: 153 TTYTPVCEYDHTW 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,616
Number of Sequences: 438
Number of extensions: 2911
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)