Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B17
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 184 2e-47
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 184 2e-47
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 184 2e-47
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot... 28 4.2
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot... 28 4.2
At5g47880.1 68418.m05915 eukaryotic peptide chain release factor... 27 5.5
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 184 bits (449), Expect = 2e-47
Identities = 80/131 (61%), Positives = 105/131 (80%)
Frame = +3
Query: 57 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 236
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 237 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAH 416
E++ ++TI++NP Q+KIPDWFLNRQKD DGKYSQ+ S+ LD IR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 417 RGMRHYWGLRV 449
RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 184 bits (449), Expect = 2e-47
Identities = 80/131 (61%), Positives = 105/131 (80%)
Frame = +3
Query: 57 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 236
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 237 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAH 416
E++ ++TI++NP Q+KIPDWFLNRQKD DGKYSQ+ S+ LD IR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 417 RGMRHYWGLRV 449
RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 184 bits (449), Expect = 2e-47
Identities = 80/131 (61%), Positives = 105/131 (80%)
Frame = +3
Query: 57 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 236
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 237 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXIRAH 416
E++ ++TI++NP Q+KIPDWFLNRQKD DGKYSQ+ S+ LD IR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 417 RGMRHYWGLRV 449
RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131
>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 435
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 79 LSGMTSDILVKFLTNVPKHNSRGNE 5
LSG T ++L KF ++PK + RG +
Sbjct: 159 LSGNTREVLHKFTVDLPKKHGRGGQ 183
>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 434
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 79 LSGMTSDILVKFLTNVPKHNSRGNE 5
LSG T ++L KF ++PK + RG +
Sbjct: 158 LSGNTREVLHKFTVDLPKKHGRGGQ 182
>At5g47880.1 68418.m05915 eukaryotic peptide chain release factor
subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic
peptide chain release factor subunit 1-1 (eRF1-1)
(Eukaryotic release factor 1-1) (Omnipotent suppressor
protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis
thaliana}, eukaryotic release factor 1 homolog
GI:1155261 from [Arabidopsis thaliana]; contains Pfam
profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2,
PF03465 eRF1 domain 3
Length = 436
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 79 LSGMTSDILVKFLTNVPKHNSRGNE 5
LSG T ++L KF ++PK + RG +
Sbjct: 160 LSGNTREVLHKFSVDLPKKHGRGGQ 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,705,037
Number of Sequences: 28952
Number of extensions: 207101
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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