Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B15
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 1e-41
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 30 0.96
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 30 1.3
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 30 1.3
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35) 29 2.2
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25) 28 3.9
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027) 27 9.0
SB_25171| Best HMM Match : Drf_FH1 (HMM E-Value=0.032) 27 9.0
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9) 27 9.0
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 27 9.0
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_4274| Best HMM Match : LRV (HMM E-Value=5.7) 27 9.0
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 165 bits (402), Expect = 1e-41
Identities = 78/95 (82%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
Frame = +2
Query: 200 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 373
+ VR+ KV CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65
Query: 374 HKRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 478
HKR+IDLHSPSEIVKQITSI+IEPGV+VEVTIADA
Sbjct: 66 HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 199 SQCALTREGLC*PHQWSQETEAACKGPSPHANQDPAYHHP 318
S C GLC P + ++ + GPSP + DP+ P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 169 YPPHQDHSYFSQCALTR---EGLC*PHQWSQETEAACKGPSPHANQDPAYHHP 318
Y P +SY + CA T+ +G + A+ + PH N DPA+ P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 134 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 235
+ + K Q E + IH + +T ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 238 HQWSQETEAACKGPSPHANQDPAYHHPEN 324
H + + GP PH+ Q P HHP++
Sbjct: 1177 HHPHEPHQVQAMGPPPHSMQQPLLHHPQD 1205
>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
Length = 1049
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -2
Query: 499 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHDFRGRV*VDHSLVDSHLK 359
FY L L V D L G+D DLF + R VD+SLV +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448
>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
Length = 1595
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 34 EVSPASALNNF*LKSCLSRPEFNKQHGSRCSVRQRHRETP-GRGLPY 171
E++P +L + L R E K+H S++ ++TP GRGL Y
Sbjct: 454 ELAPHGSLASVMEDITLGRRETEKEHVGAKSIKYETKQTPLGRGLTY 500
>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 506 KNILLAALPTRRRWSPQP 453
+N+++ LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197
>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 284 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 412
R+PT + T +K PC TW R + KR + +H P+ +
Sbjct: 22 RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64
>SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027)
Length = 345
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 495 IGGSAYASAMVTSTCTPGSMLIEVIC--FTISEGECRSITLL 376
+GGS Y ++ + CTP + L+E C + E C TLL
Sbjct: 292 LGGSLYPYPLLEAPCTP-TPLLEATCTPTPLLEATCTPTTLL 332
>SB_25171| Best HMM Match : Drf_FH1 (HMM E-Value=0.032)
Length = 244
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 495 IGGSAYASAMVTSTCTPGSMLIEVIC--FTISEGECRSITLL 376
+GGS Y ++ + CTP + L+E C + E C TLL
Sbjct: 191 LGGSLYPYPLLEAPCTP-TPLLEATCTPTPLLEATCTPTTLL 231
>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
Length = 198
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 112 GSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALTREGL 228
GSR R RHR PGR P P S+ ++ A R GL
Sbjct: 2 GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36
>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 101 TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 223
T N A+ ++S + +PQA + P+H I + SRN ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 73 KSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYPPHQ 183
+S ++ + +H S S V+ R+R G+G+ Y PHQ
Sbjct: 744 RSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.1 bits (57), Expect = 9.0
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +2
Query: 128 SGKDIEKPQAEVSPIHRIRITLTSR-NVRSLEKVCADLINGAKKQKLRVKGPVRMPTKIL 304
S + +K +VSP+ RI+ TSR ++ S DL + K K K P+ P
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183
Query: 305 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 436
P + + D ++R HKR+ D +S ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226
>SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)
Length = 327
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -2
Query: 331 ARSFPGGDTQDLGWHADWALYTQLLFLGSIDEVSTDLLE*AHIARSKSDPDAVDRGDLCL 152
A+ P G D + + W YTQL F S+ + + D ++ S + +R D+ +
Sbjct: 127 AQHKPSGWGTDEVYQSSWEFYTQLQFANSVCDDTDDTID-TITGPSTAKKRKKERDDIEV 185
Query: 151 GFLDVF 134
L++F
Sbjct: 186 NKLELF 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,137,698
Number of Sequences: 59808
Number of extensions: 390897
Number of successful extensions: 890
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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