Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B11
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   132   2e-32
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   132   3e-32
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   3.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   5.6  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    24   9.8  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    24   9.8  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  132 bits (319), Expect = 2e-32
 Identities = 62/104 (59%), Positives = 80/104 (76%)
 Frame = +1

Query: 31  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSVRTETVRRG 342
            W  FY+ LTN G+EYL  +LHLP E+VPAT KR VR    R G
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPRAG 103


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  132 bits (318), Expect = 3e-32
 Identities = 62/104 (59%), Positives = 79/104 (75%)
 Frame = +1

Query: 31  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSVRTETVRRG 342
            W  FY+ LTN G+EYL  +LHLP E+VPAT KR VR    R G
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPRAG 103


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 389 DLSSAERAGASGRPTGPRRT 330
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 113 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 205
           +H + L+  RFL + L ++C H+   +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 395 YADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRCK 270
           + DL    RA +  RP  PR +  V   ++ +   I+  +C+
Sbjct: 3   FPDLLRCSRAVSLARPDLPRNSPDVYDTKIPILQAITAKKCQ 44


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 281 LLKLCLQHLSAQYVQRQY 334
           LLK+CL  +SA Y+   Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,321
Number of Sequences: 5004
Number of extensions: 26392
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)