Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B11
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 133 6e-32
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 133 6e-32
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 126 9e-30
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.60
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 27 7.3
12_01_0858 + 8072608-8072931,8072990-8073028 27 9.7
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 27 9.7
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 27 9.7
01_01_0743 - 5763654-5766902 27 9.7
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 133 bits (322), Expect = 6e-32
Identities = 59/97 (60%), Positives = 80/97 (82%)
Frame = +1
Query: 31 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSVR 321
+W+++YWYLTN GIE+L +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 133 bits (322), Expect = 6e-32
Identities = 59/97 (60%), Positives = 80/97 (82%)
Frame = +1
Query: 31 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSVR 321
+W+++YWYLTN GIE+L +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 126 bits (304), Expect = 9e-30
Identities = 55/97 (56%), Positives = 77/97 (79%)
Frame = +1
Query: 31 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSVR 321
+W+H+YWYLTN GIE+L +L+LP E+VP TLK+S +
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAK 96
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.60
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 237
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 238 TNXGI 252
N +
Sbjct: 144 PNGSV 148
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 237
+Y+ L +G +VA KK AP+ E++ L I + GY +E Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 238 TNXGI 252
N +
Sbjct: 158 PNGSV 162
>12_01_0858 + 8072608-8072931,8072990-8073028
Length = 120
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 455 GPTSAFLS*GATPGAAGVRLYADLSSAERAGA 360
GP+SA +S G AG + AD + RAGA
Sbjct: 49 GPSSARISVDPAAGTAGAAVAADGQARARAGA 80
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 410 AGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGG 279
A V L+AD +A R AS R R V++RTE + ++ G
Sbjct: 408 AVVALFADGPTAIRDVASWRVKETERMVAIRTELTKLGASVEEG 451
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 26.6 bits (56), Expect = 9.7
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +1
Query: 7 VSLQAAFKMLMPKQNRVAIYEYLFKEGVMVAK--KDYHAPKHTELEKIPNLQVIKAMQSL 180
V+ + F L + + Y+ ++ G VA +H PK K+ + AM
Sbjct: 156 VTFSSLFCTLPLRNTMIVDYKLIYPSGSAVAGIVNSFHTPKGATKAKLQ----VNAM--F 209
Query: 181 KSRGYVKEQFAWRHFYWYLT 240
KS V FAW F W+ T
Sbjct: 210 KS---VAGSFAWAFFQWFYT 226
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 389 DLSSAERAGASGRPTGPRRTVSVRTERLSVAGTI 288
+ +SA R + R PR V V+ ERL AG +
Sbjct: 44 EAASAPRGAKNSRSRAPRTDVDVQIERLCRAGEL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,366
Number of Sequences: 37544
Number of extensions: 178871
Number of successful extensions: 478
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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