Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B11
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                167   4e-42
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      30   1.1  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             28   4.3  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     27   10.0 
SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  167 bits (406), Expect = 4e-42
 Identities = 76/108 (70%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
 Frame = +1

Query: 31  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
           ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1   MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60

Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSV-RTETVRRGPVG 351
            W+H+YW LTN GI YL  FLHLP EIVPATL+R V R ET R  P G
Sbjct: 61  CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKG 108


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 409 AAPGVAPHDKKADVGPA 459
           A PG+APHDKK+  GP+
Sbjct: 545 ARPGLAPHDKKSGKGPS 561


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +1

Query: 103 KDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNXGIEYLXIFLHLP 282
           +DY A   T    I  +  ++ +  + SRG+VK+ +A+    W   +  + +L  +L L 
Sbjct: 118 EDYDASGGTVY--ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLA 174

Query: 283 PEIVPATLKRSVR 321
           P+I   +  R++R
Sbjct: 175 PDIASLSGIRTLR 187


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 55   VAIYEYLFKEGVMVAKKDYHAPKHTELEKIPN 150
            +A +++L K  +   +    APK   +EK+PN
Sbjct: 1395 IADFDFLSKSAIQALRLPVPAPKVNNMEKVPN 1426


>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 409 AAPGVAPHDKKADVGP 456
           A  G+APHDKKA  GP
Sbjct: 377 ARHGLAPHDKKAGRGP 392


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +1

Query: 403 TPAAPGVAPHDK-KADVGP 456
           TPA PG+AP D  K  VGP
Sbjct: 366 TPALPGIAPSDALKGTVGP 384


>SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 59  ATRFCLGINILKAACRL 9
           + RFCLGIN+L   C++
Sbjct: 279 SNRFCLGINLLLRTCKV 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,014,731
Number of Sequences: 59808
Number of extensions: 203255
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)