BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B11
(461 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69981-1|CAA93821.1| 327|Anopheles gambiae maltase precursor pr... 23 5.2
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc... 23 5.2
>Z69981-1|CAA93821.1| 327|Anopheles gambiae maltase precursor
protein.
Length = 327
Score = 23.0 bits (47), Expect = 5.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 81 RGSHGGQKRLSCTEAY*T 134
+ HGG+ R+ TEAY T
Sbjct: 9 QAEHGGETRVIMTEAYST 26
>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
channel alpha1 subunit protein.
Length = 1893
Score = 23.0 bits (47), Expect = 5.2
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +1
Query: 121 KHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNXGIEYLXIFL 273
K+ +L+K + A+++ R Y+ + +W++T+ EY+ L
Sbjct: 1134 KNCDLDKNQRNCIEFALKAKPIRRYIPKHRIQYKVWWFVTSQPFEYMIFVL 1184
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,116
Number of Sequences: 2352
Number of extensions: 6732
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39969834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -