Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B11
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   130   3e-31
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   128   2e-30
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   124   2e-29
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   2.7  
At5g36210.1 68418.m04365 expressed protein                             27   4.7  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   6.2  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  130 bits (315), Expect = 3e-31
 Identities = 56/94 (59%), Positives = 75/94 (79%)
 Frame = +1

Query: 31  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKR 312
           AW H+YW+LTN GI++L  +L+LP EIVPATLK+
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKK 94


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  128 bits (308), Expect = 2e-30
 Identities = 56/97 (57%), Positives = 76/97 (78%)
 Frame = +1

Query: 31  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSVR 321
           AW H+YW+LTN GIE+L  +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  124 bits (300), Expect = 2e-29
 Identities = 55/97 (56%), Positives = 75/97 (77%)
 Frame = +1

Query: 31  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 210
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 211 AWRHFYWYLTNXGIEYLXIFLHLPPEIVPATLKRSVR 321
           AW H+YW+LTN GIE+L  +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 118 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 207
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 28  KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 126
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 123 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 37
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,315,052
Number of Sequences: 28952
Number of extensions: 140038
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)