BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP02_F_B10 (654 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 306 9e-84 At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 305 1e-83 At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 305 1e-83 At4g38440.1 68417.m05432 expressed protein 31 0.67 At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.67 At1g29760.1 68414.m03639 expressed protein 31 0.67 At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 2.7 At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 4.7 At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 4.7 At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 4.7 At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 28 6.2 At5g27010.1 68418.m03222 hypothetical protein 27 8.2 At2g38570.1 68415.m04738 expressed protein ; expression supporte... 27 8.2 >At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal protein S4, Arabidopsis thaliana, PIR:T48480 Length = 262 Score = 306 bits (751), Expect = 9e-84 Identities = 140/195 (71%), Positives = 163/195 (83%) Frame = +1 Query: 70 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429 V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120 Query: 430 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 609 +KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180 Query: 610 CMITGGRNLGRVGTI 654 M+TGGRN GRVG I Sbjct: 181 VMVTGGRNRGRVGVI 195 >At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) Length = 262 Score = 305 bits (750), Expect = 1e-83 Identities = 140/195 (71%), Positives = 163/195 (83%) Frame = +1 Query: 70 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429 V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120 Query: 430 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 609 +KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180 Query: 610 CMITGGRNLGRVGTI 654 M+TGGRN GRVG I Sbjct: 181 VMVTGGRNRGRVGVI 195 >At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22 Length = 261 Score = 305 bits (750), Expect = 1e-83 Identities = 140/195 (71%), Positives = 163/195 (83%) Frame = +1 Query: 70 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429 V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120 Query: 430 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 609 +KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180 Query: 610 CMITGGRNLGRVGTI 654 M+TGGRN GRVG I Sbjct: 181 VMVTGGRNRGRVGVI 195 >At4g38440.1 68417.m05432 expressed protein Length = 1465 Score = 31.1 bits (67), Expect = 0.67 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Frame = +1 Query: 97 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 264 +R+ P W L + V++ + STGP + E L + V FL + G+ +V Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199 Query: 265 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 396 L+ K T MD++ + T L+ + ++ G+F Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240 >At4g10710.1 68417.m01751 transcriptional regulator-related similar to chromatin-specific transcription elongation factor FACT 140 kDa subunit (GI:5499741) [Homo sapiens] Length = 1074 Score = 31.1 bits (67), Expect = 0.67 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 194 KHSRNLWGPVDGLGAYTPPSLSNIHAL 114 KHS +LWG D L TPP+ ++ L Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70 >At1g29760.1 68414.m03639 expressed protein Length = 526 Score = 31.1 bits (67), Expect = 0.67 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 305 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 213 S+LTFP +R CF F F + RRFL Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225 >At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, putative / steroid 5-alpha-reductase, putative identical to gi:1280611; contains a steroid 5-alpha reductase, C-terminal domain Length = 262 Score = 29.1 bits (62), Expect = 2.7 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 284 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 168 TF R C + P A +FL+ GKH+R WGP Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45 >At4g08180.3 68417.m01353 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 813 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 217 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 351 N ++A+T NE+ +K+RL D ++R D Y G ++ + EK Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748 >At4g08180.2 68417.m01352 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 813 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 217 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 351 N ++A+T NE+ +K+RL D ++R D Y G ++ + EK Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748 >At4g08180.1 68417.m01351 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 814 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 217 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 351 N ++A+T NE+ +K+RL D ++R D Y G ++ + EK Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749 >At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein kinase, putative Length = 658 Score = 27.9 bits (59), Expect = 6.2 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 493 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 624 H+ + +P ++N+ I+LDI++ I F NL +TG Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167 >At5g27010.1 68418.m03222 hypothetical protein Length = 863 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 5 TSLVFTLILDLTFLSRFNTCPTWREALRSI*SA*TLPKHG 124 T +V L+LDL + N PT+ E +RS +P HG Sbjct: 503 TKVVLQLLLDLARVGCLNASPTFEEEIRSF----FIPFHG 538 >At2g38570.1 68415.m04738 expressed protein ; expression supported by MPSS Length = 302 Score = 27.5 bits (58), Expect = 8.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 568 TKIMDFIKFESGNLCMITGGRNLGRVGT 651 T I+ +IK G + GGRN+G+V T Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,191,300 Number of Sequences: 28952 Number of extensions: 331673 Number of successful extensions: 912 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 911 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1363910256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -