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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B10
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   306   9e-84
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             305   1e-83
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   305   1e-83
At4g38440.1 68417.m05432 expressed protein                             31   0.67 
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.67 
At1g29760.1 68414.m03639 expressed protein                             31   0.67 
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   2.7  
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    28   4.7  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    28   4.7  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    28   4.7  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    28   6.2  
At5g27010.1 68418.m03222 hypothetical protein                          27   8.2  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    27   8.2  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  306 bits (751), Expect = 9e-84
 Identities = 140/195 (71%), Positives = 163/195 (83%)
 Frame = +1

Query: 70  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429
           V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 430 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 609
           +KLCKV+ +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 610 CMITGGRNLGRVGTI 654
            M+TGGRN GRVG I
Sbjct: 181 VMVTGGRNRGRVGVI 195


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  305 bits (750), Expect = 1e-83
 Identities = 140/195 (71%), Positives = 163/195 (83%)
 Frame = +1

Query: 70  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429
           V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 430 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 609
           +KLCKV+ +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 610 CMITGGRNLGRVGTI 654
            M+TGGRN GRVG I
Sbjct: 181 VMVTGGRNRGRVGVI 195


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  305 bits (750), Expect = 1e-83
 Identities = 140/195 (71%), Positives = 163/195 (83%)
 Frame = +1

Query: 70  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429
           V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 430 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 609
           +KLCKV+ +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 610 CMITGGRNLGRVGTI 654
            M+TGGRN GRVG I
Sbjct: 181 VMVTGGRNRGRVGVI 195


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
 Frame = +1

Query: 97   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 264
            +R+  P  W L  +  V++ + STGP +  E L +    V FL      +  G+    +V
Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199

Query: 265  KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 396
               L+    K     T     MD++  + T  L+  + ++ G+F
Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 194 KHSRNLWGPVDGLGAYTPPSLSNIHAL 114
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 305 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 213
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 284 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 168
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 217 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 351
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 217 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 351
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 217 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 351
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 493 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 624
           H+  +  +P    ++N+ I+LDI++      I F   NL  +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167


>At5g27010.1 68418.m03222 hypothetical protein
          Length = 863

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   TSLVFTLILDLTFLSRFNTCPTWREALRSI*SA*TLPKHG 124
           T +V  L+LDL  +   N  PT+ E +RS      +P HG
Sbjct: 503 TKVVLQLLLDLARVGCLNASPTFEEEIRSF----FIPFHG 538


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 568 TKIMDFIKFESGNLCMITGGRNLGRVGT 651
           T I+ +IK   G   +  GGRN+G+V T
Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,300
Number of Sequences: 28952
Number of extensions: 331673
Number of successful extensions: 912
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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