Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B08
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.64 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.9  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 523 YKSHIYSYNSTRNTLYFNTIYSNY*NHQK--YYSTXNFSQ 636
           + ++ Y YN   N    N   +NY N+ K  YY+  N  Q
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 529 SHIYSYNSTRNTLYFNTIYSNY*NHQKYYSTXNFSQ 636
           S+ Y+YN+  N  Y N   +NY   Q YY+  N  Q
Sbjct: 89  SNNYNYNNNYNN-YNNNYNTNYKKLQ-YYNIINIEQ 122


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 559 NTLYFNTIYSNY*NHQKYYSTXNFSQ 636
           ++L  NTI++N  N + YY+  N  Q
Sbjct: 316 SSLSNNTIHNNNYNKKLYYNIINIEQ 341


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 553 TRNTLYFNTIYSNY*NHQKYYSTXNFSQ 636
           +  T++ N  Y+NY N + YY+     Q
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYNINYIEQ 335


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 339 NVLNSLCNFFEMKFHIIKCRFGINQN 262
           NV   +C+ + ++F  +  ++GI QN
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQN 73


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 514 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 615
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 514 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 615
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 642 IVLAKVXGRIIFLMVSIIT 586
           ++  KV  R+  LM+S+IT
Sbjct: 631 VLAKKVADRVSMLMISVIT 649


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 541 SYNSTRNTLYFNTIYSNY 594
           S+  T N  YF+  Y NY
Sbjct: 209 SWRITHNFFYFDPRYGNY 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,167
Number of Sequences: 438
Number of extensions: 2164
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)