Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B07
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81138-6|CAB03476.2|  515|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL023844-14|CAO82065.1|  515|Caenorhabditis elegans Hypothetical...    29   3.8  
AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear recep...    28   6.7  
AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormo...    28   6.7  

>Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 RLLLAAWTVYSPVSKMIQTNMTNRFCICSADT 351
           +LLL+ W V+S + K+I T    +  +CS  T
Sbjct: 197 KLLLSFWHVFSRLDKLITTARARKLKVCSQQT 228


>Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 RLLLAAWTVYSPVSKMIQTNMTNRFCICSADT 351
           +LLL+ W V+S + K+I T    +  +CS  T
Sbjct: 197 KLLLSFWHVFSRLDKLITTARARKLKVCSQQT 228


>Z81138-6|CAB03476.2|  515|Caenorhabditis elegans Hypothetical
           protein W05B2.7 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 332 QNLFVMLVCIILETGE*TVQAAR--SSRGANYGLISRCLCHFCGSRRFCCF 186
           Q   V L+C+ + T   T Q  +  SS  ++  +I+R L     SRRFC F
Sbjct: 307 QEKAVTLICVSMCTSHLTSQNVQFDSSMASSSNVINRILRTLKSSRRFCLF 357


>AL023844-14|CAO82065.1|  515|Caenorhabditis elegans Hypothetical
           protein W05B2.7 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 332 QNLFVMLVCIILETGE*TVQAAR--SSRGANYGLISRCLCHFCGSRRFCCF 186
           Q   V L+C+ + T   T Q  +  SS  ++  +I+R L     SRRFC F
Sbjct: 307 QEKAVTLICVSMCTSHLTSQNVQFDSSMASSSNVINRILRTLKSSRRFCLF 357


>AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear receptor
           NHR-90 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 RLLLAAWTVYSPVSKMIQTNMTNRFCICSADT 351
           +LLL+ W V++ + K+I T    +  +CS  T
Sbjct: 219 KLLLSFWHVFARLDKLITTAKARKLKLCSQQT 250


>AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 90 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 RLLLAAWTVYSPVSKMIQTNMTNRFCICSADT 351
           +LLL+ W V++ + K+I T    +  +CS  T
Sbjct: 204 KLLLSFWHVFARLDKLITTAKARKLKLCSQQT 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,710
Number of Sequences: 27780
Number of extensions: 215815
Number of successful extensions: 503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)