Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B07
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) ...    34   0.095
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-...    32   0.29 
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-...    32   0.29 
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    29   2.7  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    28   4.7  
At3g52130.1 68416.m05722 protease inhibitor/seed storage/lipid t...    27   8.2  

>At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 2)
           identical to SP|Q9T0P4 Ferredoxin-dependent glutamate
           synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT
           2) {Arabidopsis thaliana}
          Length = 1629

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 456 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRIN 280
           A+   H  L++ G+  SAS+      C    + AC +G   A ++C H++L   R WR++
Sbjct: 733 AVGAVHQHLIQNGLRMSASIIADTAQCFSTHHFACLIG-YGASAICPHLALETCRQWRLS 791

Query: 279 S 277
           +
Sbjct: 792 N 792


>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1648

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 456 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRIN 280
           A+   H  L++ G+  SAS+      C    + AC VG   A +VC +++L   R WR++
Sbjct: 757 AVGAVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLS 815

Query: 279 S 277
           +
Sbjct: 816 N 816


>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1622

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 456 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRIN 280
           A+   H  L++ G+  SAS+      C    + AC VG   A +VC +++L   R WR++
Sbjct: 731 AVGAVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLS 789

Query: 279 S 277
           +
Sbjct: 790 N 790


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 228 SGNKPIICAPTTPCRLDCLFA 290
           SG K ++  P  PC L+CLFA
Sbjct: 792 SGCKRLVSLPELPCSLECLFA 812


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -2

Query: 311 VCIILETGE*TVQAARSSRGANYGLISRCLCHFCGSRRFCCFGSLCRRLSGICYLEPV 138
           VC++   GE   + A        G++   LC+       CC+G  C+   GI  L PV
Sbjct: 211 VCVVQTKGE---REALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPV 265


>At3g52130.1 68416.m05722 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           cysteine-rich 5B protein - Lycopersicon esculentum,
           PIR2:S39552 [GI:415833]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 125

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 341 QPTPHALLPKT-IQKCTRTFTDALA-LIPTRSS 433
           QP P  +LP+  +  C+RTF  AL  LIP R++
Sbjct: 33  QPPPPPMLPEEEVGGCSRTFFSALVQLIPCRAA 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,098,333
Number of Sequences: 28952
Number of extensions: 192589
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)