Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B05
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    31   0.11 
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   6.9  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 221  NVTKYNSTLXETSLXRINLFKEALSSAXNGRVLYILHEELSQLPTLSQDLNSVNRHFM-- 394
            N+T  +STL  +    ++     ++S+ +   L    +  S   TLS+ ++S+N + +  
Sbjct: 920  NITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTV 979

Query: 395  KMISFLYVXTIEALIDSVSTLP 460
            K  S L   T   L  S ST+P
Sbjct: 980  KPESSLSSSTTSGLTSSSSTIP 1001


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 446 VSTLPDWQNVPSTIILXDLSKFFSRNXXQTLWGLLLC 556
           V   P WQ+     IL  L     +N   T+  LLLC
Sbjct: 73  VGESPQWQSFGDANILEPLKNELVKNEESTMSELLLC 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,081
Number of Sequences: 5004
Number of extensions: 41099
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)