Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B05
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011...    27   9.4  
01_05_0582 - 23411593-23411626,23413276-23413361,23413713-234137...    27   9.4  

>07_03_1091 +
           23899825-23900649,23900750-23900998,23901104-23901195,
           23901413-23902193
          Length = 648

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 483 QLFXMT*ASSSVETXXKHYGDYCSVMDSVRXCSVSLGKPCNYLLL 617
           Q+  +T A S       H+G Y  + DS R C VSL    + L+L
Sbjct: 60  QVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLIL 104


>01_05_0582 -
           23411593-23411626,23413276-23413361,23413713-23413737,
           23413765-23413823,23414301-23414333
          Length = 78

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 326 LHEELSQLPTLSQDLNSVNRHFMKMISFLYVXTIEALIDSVSTLPDWQNV 475
           ++ ++  L  LS+      RH+   ISFLY+  I+   + V     +QN+
Sbjct: 3   INVDIKYLQNLSEQAALSLRHYKVPISFLYIQLIQVQSNFVHFFKSFQNM 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,332
Number of Sequences: 37544
Number of extensions: 197979
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)