Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B05
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)                 29   3.2  
SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             27   9.7  

>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
          Length = 1582

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
 Frame = +2

Query: 272  NLFKEALSSAXNGRVLYILHEELSQLPTLSQDLNSVNRHFMKMISFLYVXTIEALIDSVS 451
            N  +E    A  G       +  + L   S+ LN    HF ++++   +   E  ++S+ 
Sbjct: 1156 NGLREMYGPAKRGSTQLTATDGCTILQEKSEILNRFLDHFDQLLNVSGLVD-EGTLNSLQ 1214

Query: 452  TLPDWQ------NVPSTIILXDLSKFFSRNXXQTLWGLLLCDGQCTDXF 580
            T P+ Q      N+P   +  D SK F     + LW +L+  G C   F
Sbjct: 1215 TRPETQEKCIEQNMPLYAVFIDFSKAFDTVSREALWQVLVKFG-CPPKF 1262


>SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1638

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +2

Query: 332  EELSQLPTLSQDLNSVNRHFMKMISFLYVXTIEALIDSVSTLPDWQNVPSTII-LXDLSK 508
            E+++  PT +Q    V  + +K+   L     EA  D    L DW+N PS  +    + +
Sbjct: 1107 EQVTSSPTYAQSNGKVENN-VKIAKKLMRKAFEAKNDPYMALLDWRNTPSECLNSSPVQR 1165

Query: 509  FFSRNXXQTL 538
             F R     L
Sbjct: 1166 IFGRRTETLL 1175


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 98  INFSAYFKYLGHLFSLSNM*LCISHLFLFSSH 3
           I+FS  F YL HL+ +S   +  SHL  +  H
Sbjct: 225 IHFSPLFTYLIHLYPISYRTIHFSHLVTYLIH 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,427
Number of Sequences: 59808
Number of extensions: 266920
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)