Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B05
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical p...    29   3.7  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical
           protein F56H6.9 protein.
          Length = 803

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 218 WNVTKYNSTLXETSLXR--INLFKEALSSAXNGRVLYILHEELSQL 349
           WN T+ NST+ E  + +  ++L KE L  + + R++ +  E+L  +
Sbjct: 358 WNCTRNNSTVLENCINQLLVDLAKEKLWGSEDARLMGMYLEDLKSM 403


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = -1

Query: 417 T*RKLIIFMKCLFTEFKSCDNVGS*LNSSWRI*RTLPFXALDKA---SLKRFILXKLV-S 250
           T  KLI F+KC +T  +  D   S +   WR      F +L +    S+ R  + +L+ S
Sbjct: 266 TCEKLIHFVKCFYTYTEPSDR-ESHVKGRWRSDVNKYFESLSRKNVDSVSREYVDELIQS 324

Query: 249 XKVELYFVTFH 217
             ++L ++T+H
Sbjct: 325 LSIQLKYLTYH 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,426,324
Number of Sequences: 27780
Number of extensions: 219934
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)