Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B04
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 88 8e-19
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 79 3e-16
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 74 2e-14
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 2.0
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 2.0
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 2.0
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 2.0
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 2.6
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 88.2 bits (209), Expect = 8e-19
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +1
Query: 85 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 264
+S +ELA YSALIL D+ + +T +K+ ++ KAA V VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 265 NIGSGVGAAPAAGWSA 312
NIGSG GAAP AG +A
Sbjct: 61 NIGSGAGAAPVAGGAA 76
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 386 SDDDMGFGLFD 418
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 79.4 bits (187), Expect = 3e-16
Identities = 39/73 (53%), Positives = 54/73 (73%)
Frame = +1
Query: 85 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 264
+S +ELA YSALIL D+ + +T +K+ ++ KAA V VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 265 NIGSGVGAAPAAG 303
NIGS AAPAAG
Sbjct: 61 NIGS-AAAAPAAG 72
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 386 SDDDMGFGLFD 418
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/73 (47%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +1
Query: 85 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 264
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 265 NIGS-GVGAAPAA 300
NIGS G +AP A
Sbjct: 61 NIGSAGAASAPTA 73
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 386 SDDDMGFGLFD 418
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 386 SDDDMGFGLFD 418
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 386 SDDDMGFGLFD 418
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 386 SDDDMGFGLFD 418
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 386 SDDDMGFGLFD 418
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 2.6
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 67 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVXVEPYWPGLFAKALE 237
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 238 GINVRDLIT 264
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,339
Number of Sequences: 5004
Number of extensions: 34493
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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