Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B04
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    91   6e-19
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   2.0  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 43/76 (56%), Positives = 57/76 (75%)
 Frame = +1

Query: 85  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 264
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 265 NIGSGVGAAPAAGWSA 312
           ++GSG GAAP A  +A
Sbjct: 61  SVGSGGGAAPVAAAAA 76


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 49  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 171
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,376,478
Number of Sequences: 37544
Number of extensions: 255909
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)