Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B04
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   2e-22
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.031
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score =  102 bits (245), Expect = 2e-22
 Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
 Frame = +1

Query: 82  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 261
           M S +ELACVYSALIL DDDVA+T +KI T++KAA + VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 262 TNIGS-----GVGAAPAAGWSA 312
            + G+      V AAPAAG  A
Sbjct: 61  LSAGAPGAGGAVAAAPAAGGEA 82



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 261 DQVTDIDAFQGFGEQTWPIWLYXYSRRFQDGGNFLTSYGNIIIHQDESR 115
           DQ+  I+ F+  G++ WP +    S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,867,432
Number of Sequences: 59808
Number of extensions: 259523
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)