Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B04
         (577 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...   136   3e-32
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...   136   3e-32
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...   136   3e-32
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...   129   2e-30
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    28   7.9  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score =  136 bits (328), Expect = 3e-32
 Identities = 65/74 (87%), Positives = 70/74 (94%)
 Frame = +1

Query: 82  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 261
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLI
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 262 TNIGSGVGAAPAAG 303
           TNIGSGVGAAPA G
Sbjct: 61  TNIGSGVGAAPAGG 74



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score =  136 bits (328), Expect = 3e-32
 Identities = 65/74 (87%), Positives = 70/74 (94%)
 Frame = +1

Query: 82  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 261
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLI
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 262 TNIGSGVGAAPAAG 303
           TNIGSGVGAAPA G
Sbjct: 61  TNIGSGVGAAPAGG 74



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score =  136 bits (328), Expect = 3e-32
 Identities = 65/74 (87%), Positives = 70/74 (94%)
 Frame = +1

Query: 82  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 261
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLI
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 262 TNIGSGVGAAPAAG 303
           TNIGSGVGAAPA G
Sbjct: 61  TNIGSGVGAAPAGG 74



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score =  129 bits (312), Expect = 2e-30
 Identities = 63/74 (85%), Positives = 68/74 (91%)
 Frame = +1

Query: 82  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 261
           M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V VEPYWPGLFAKALE INV+DLI
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLI 60

Query: 262 TNIGSGVGAAPAAG 303
           TNIGSGVGAAPA G
Sbjct: 61  TNIGSGVGAAPAGG 74



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 263 VIRSRTLMPSKALANRPGQYGSTXTAAAFKMVEI 162
           +I S+ L+P+K   N P QY  T    A K  +I
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKI 288


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,754,789
Number of Sequences: 53049
Number of extensions: 419891
Number of successful extensions: 1119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)