Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B04
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   112   2e-25
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   108   2e-24
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   3.1  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  112 bits (269), Expect = 2e-25
 Identities = 51/77 (66%), Positives = 64/77 (83%)
 Frame = +1

Query: 82  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 261
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 262 TNIGSGVGAAPAAGWSA 312
           T++ SG G+ PA   +A
Sbjct: 61  TSVSSGAGSGPAPAAAA 77



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  108 bits (260), Expect = 2e-24
 Identities = 50/77 (64%), Positives = 63/77 (81%)
 Frame = +1

Query: 82  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 261
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 262 TNIGSGVGAAPAAGWSA 312
           T++ SG G+ PA   +A
Sbjct: 61  TSVSSGAGSGPAPAAAA 77



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 386 SDDDMGFGLFD 418
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 106 CVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 276
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 185  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 75
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 185  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 75
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,045
Number of Sequences: 27780
Number of extensions: 202720
Number of successful extensions: 429
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)