Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B03
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   179   3e-46
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   178   4e-46
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   5e-08
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   1.3  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   2.2  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   2.9  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.9  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.1  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   6.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.0  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  179 bits (435), Expect = 3e-46
 Identities = 89/146 (60%), Positives = 104/146 (71%)
 Frame = +3

Query: 30  LRSTKPSRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKK 209
           LR  +  R   + G  L  +L+ +S+     EQL++L H         GL       ++K
Sbjct: 15  LRKKRTFRTFAYRGVELE-QLLDLSA-----EQLVDLFHARARRRMLRGLGPNASRFIRK 68

Query: 210 LRRAKKEAPPNXKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEF 389
           LR+AK EAP N KP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEF
Sbjct: 69  LRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEF 128

Query: 390 SVTYKPVKHGRPGIGATHSSRFIPLK 467
           S+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 129 SITYKPTKHGRPGIGATHSSRFIPLK 154


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  178 bits (434), Expect = 4e-46
 Identities = 89/146 (60%), Positives = 104/146 (71%)
 Frame = +3

Query: 30  LRSTKPSRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKK 209
           LR  +  R   + G  L  +L+ +S+     EQL++L H         GL       ++K
Sbjct: 14  LRKKRSFRTFAYRGVELE-QLLDLSA-----EQLVDLFHARARRRMLRGLGPNASRFIRK 67

Query: 210 LRRAKKEAPPNXKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEF 389
           LR+AK EAP N KP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEF
Sbjct: 68  LRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEF 127

Query: 390 SVTYKPVKHGRPGIGATHSSRFIPLK 467
           S+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 128 SITYKPTKHGRPGIGATHSSRFIPLK 153


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +3

Query: 258 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 404
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 320 NADN*TDHLGNDDHVSQVSLHDLWLXIR 237
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 460 GMNLELCVAPIPGLPCFTGLYVTENS 383
           G+N+ LCV   PG P  TG  ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 451 LELCVAPIPGLPCFTGLYVTE 389
           LELC    PG+P   G++  E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +3

Query: 294 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 443
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 324 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 410
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +3

Query: 12  NKQET-WLRST-KPSRKSVFSGSSLTGEL 92
           NKQET  L++T +P+ K +  GSS TG++
Sbjct: 39  NKQETAGLQTTSRPTAKQLVGGSSWTGKI 67


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = +3

Query: 177 LKRKPMALVKKLRRAKKEAPPNXKPEIV---KTHL---RNMIIVPEMVGSIVGIYNGKTF 338
           L +  + LV+ L++      PN  PEIV   KT+L    N +IV  ++   +  Y+ +  
Sbjct: 115 LNKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEIFDYSAEQM 174

Query: 339 NQVEIKPEMIGHYLGEFSVTYK 404
            Q++ K  +     GEF+  ++
Sbjct: 175 TQLKTK-NLKNQMCGEFAEIFQ 195


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 177 LKRKPMALVKKLRRAKKEAPPNXKPEIVKTHL 272
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,317
Number of Sequences: 5004
Number of extensions: 34924
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)