Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B03
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             200   6e-52
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     27   7.0  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    27   9.3  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  200 bits (488), Expect = 6e-52
 Identities = 92/120 (76%), Positives = 104/120 (86%)
 Frame = +3

Query: 108 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNXKPEIVKTHLRNMII 287
           L + +EQLMEL+          GLKRKP+AL+K+LR+AKKEA P  KPE+VKTHLRNMII
Sbjct: 30  LDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKKEAAPMEKPEVVKTHLRNMII 89

Query: 288 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 467
           VPEM+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 90  VPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +2

Query: 38  DETLKKKRIFRKFTYRGVDLDQLL 109
           D  +K+KR FRKFTYRGVDLDQLL
Sbjct: 7   DAQIKRKRTFRKFTYRGVDLDQLL 30


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 118 GICKELIEINSPVSELPENT 59
           GIC++  E++  V E+P+NT
Sbjct: 470 GICRQYDEVSDKVQEMPDNT 489


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 348  EIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIP 461
            ++KP++  +  G ++V Y P K GR  I   +  R +P
Sbjct: 1714 DLKPDVKDNGDGTYTVAYVPDKPGRYNIDVKYGDRRVP 1751


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = -1

Query: 389 ELSEVMADHLRLDFNLVKSFSVVNADN*TDHLGNDDHVSQVSLHDLWLXIRRSLFLGATQ 210
           +LSE++     LDF+   + SV++ D+ T    N+ H S  ++ +L      ++ LG+ +
Sbjct: 769 DLSELIVPPPMLDFDDGDASSVLSTDSFTTSHTNNTHNSTTTVDELLQVCWSAVLLGSVE 828

Query: 209 LL 204
           ++
Sbjct: 829 VV 830


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,385
Number of Sequences: 59808
Number of extensions: 266528
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)