Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B03
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   165   2e-41
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    27   6.1  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  165 bits (401), Expect = 2e-41
 Identities = 77/120 (64%), Positives = 92/120 (76%)
 Frame = +3

Query: 108 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNXKPEIVKTHLRNMII 287
           L M  EQ  +L+          GLKRK +AL+ K+++AKK A    KP  VKTHLR+MII
Sbjct: 32  LDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMII 91

Query: 288 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 467
           +PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 92  LPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +2

Query: 17  TRNMAEVDETLKKKRIFRKFTYRGVDLDQLL 109
           T++ A + E LKKKR FRKF YRGVDLDQLL
Sbjct: 3   TQDDAHLAE-LKKKRTFRKFMYRGVDLDQLL 32


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 183 RKPMALVKKLRRAKKEAPPNXK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTF 338
           +K + +++K+R   K++  N +  P +V   L+N+  V E+   +    N KTF
Sbjct: 560 QKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLKNLAKVREISDKMKENSNNKTF 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,587,725
Number of Sequences: 27780
Number of extensions: 198976
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)