Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_B03
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   190   6e-49
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   190   6e-49
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   189   8e-49
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   183   7e-47
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           181   2e-46
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative          142   1e-34
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    47   7e-06
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    36   0.012
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   2.5  
At5g26717.1 68418.m03160 hypothetical protein                          28   3.3  
At3g22380.1 68416.m02825 expressed protein                             28   3.3  

>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  190 bits (462), Expect = 6e-49
 Identities = 86/120 (71%), Positives = 99/120 (82%)
 Frame = +3

Query: 108 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNXKPEIVKTHLRNMII 287
           L M  + L++L           GL RKPMAL+KKLR+AK+EAP   KPE V+THLRNMII
Sbjct: 33  LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMII 92

Query: 288 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 467
           VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93  VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 53  KKRIFRKFTYRGVDLDQLL 109
           KKR F+KF ++GVDLD LL
Sbjct: 15  KKRTFKKFAFKGVDLDALL 33


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  190 bits (462), Expect = 6e-49
 Identities = 86/120 (71%), Positives = 99/120 (82%)
 Frame = +3

Query: 108 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNXKPEIVKTHLRNMII 287
           L M  + L++L           GL RKPMAL+KKLR+AK+EAP   KPE V+THLRNMII
Sbjct: 33  LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMII 92

Query: 288 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 467
           VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93  VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 53  KKRIFRKFTYRGVDLDQLL 109
           KKR F+KF ++GVDLD LL
Sbjct: 15  KKRTFKKFAFKGVDLDALL 33


>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  189 bits (461), Expect = 8e-49
 Identities = 87/140 (62%), Positives = 107/140 (76%)
 Frame = +3

Query: 48  SRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 227
           ++K  F   S  G  +  + L MP + L+EL           GL RKPMAL+KKLR+AK 
Sbjct: 14  AKKRTFKKFSFKGVDLD-ALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 228 EAPPNXKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 407
           +AP   KPE+V+THLRNM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKP
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132

Query: 408 VKHGRPGIGATHSSRFIPLK 467
           V+HG+PG GATHSSRFIPLK
Sbjct: 133 VRHGKPGHGATHSSRFIPLK 152



 Score = 34.3 bits (75), Expect = 0.050
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 47  LKKKRIFRKFTYRGVDLDQLL 109
           L KKR F+KF+++GVDLD LL
Sbjct: 13  LAKKRTFKKFSFKGVDLDALL 33


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  183 bits (445), Expect = 7e-47
 Identities = 87/139 (62%), Positives = 104/139 (74%)
 Frame = +3

Query: 51  RKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKE 230
           +K  F   S  G  +  + L M  + L++L           GL RKPMAL+KKLR+AK E
Sbjct: 13  KKRTFKKFSFRGVDLD-ALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIE 71

Query: 231 APPNXKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPV 410
           AP   KP  V+THLRNMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPV
Sbjct: 72  APAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 131

Query: 411 KHGRPGIGATHSSRFIPLK 467
           KHGRPG+GAT+SSRFIPLK
Sbjct: 132 KHGRPGVGATNSSRFIPLK 150


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  181 bits (441), Expect = 2e-46
 Identities = 88/139 (63%), Positives = 103/139 (74%)
 Frame = +3

Query: 51  RKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKE 230
           +K  F   S  G  +  + L M  E L++            GL RKPMAL+KKLR+AK E
Sbjct: 12  KKRTFKKFSFRGVDLD-ALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKME 70

Query: 231 APPNXKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPV 410
           AP   KP  V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPV
Sbjct: 71  APAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 130

Query: 411 KHGRPGIGATHSSRFIPLK 467
           KHGRPG+GAT+SSRFIPLK
Sbjct: 131 KHGRPGVGATNSSRFIPLK 149


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score =  142 bits (345), Expect = 1e-34
 Identities = 76/146 (52%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
 Frame = +3

Query: 48  SRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 227
           ++K  F   S  G  +  + L M N  L +L +         GLK++P+ L+KKLRRAKK
Sbjct: 16  TKKRTFKKFSFRGFNVD-ALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKK 74

Query: 228 EAPPNXK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTY 401
           EA    K  PE+VKTHLRNMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T 
Sbjct: 75  EASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTC 134

Query: 402 KPVKHGRPGIGA----THSSRFIPLK 467
           K V H RP I        S+RFIPL+
Sbjct: 135 KKVNHHRPRICGCCCFRRSTRFIPLR 160


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 23/50 (46%), Positives = 29/50 (58%)
 Frame = +3

Query: 273 RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 422
           R   I+PE V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +2

Query: 53  KKRIFRKFTYRGVDLDQLL 109
           KKRIF+KF++RGVDLD LL
Sbjct: 12  KKRIFKKFSFRGVDLDALL 30



 Score = 34.3 bits (75), Expect = 0.050
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +3

Query: 51  RKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 227
           +K +F   S  G  +  + L M  E L++            G  RKPMAL+KKLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLD-ALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 351 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 452
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


>At5g26717.1 68418.m03160 hypothetical protein
          Length = 141

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 23  NMAEVDETLKKKRIFRKFTYRGVDLDQLLAYAQ*ATHGINAC 148
           N + +D+T+KKK + RK T     +  L+A    A  G+ AC
Sbjct: 44  NTSRIDQTIKKKSLKRKMTGNMYKMMMLMALIMMAC-GLQAC 84


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 206 EAASRQERGSSE*XARDREDSLEKHDHRSRD---GRFNCRHLQRK 331
           EAA  ++RG S    RDRE   ++   R RD    R N R  +R+
Sbjct: 43  EAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRSKRRR 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,399
Number of Sequences: 28952
Number of extensions: 189309
Number of successful extensions: 530
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)