Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B02
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 105 3e-24
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 101 6e-23
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 100 1e-22
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 38 0.001
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 37 0.002
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 37 0.002
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.40
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 29 0.40
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.92
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 1.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.6
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 2.8
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 3.7
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 26 3.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 4.9
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 4.9
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 6.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 8.6
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 8.6
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 105 bits (253), Expect = 3e-24
Identities = 51/106 (48%), Positives = 71/106 (66%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVP 66
Query: 278 VGGGXXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GG E E K K ESD+DMGFGLFD
Sbjct: 67 TGGAASAAPAAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 101 bits (242), Expect = 6e-23
Identities = 49/106 (46%), Positives = 71/106 (66%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVP 66
Query: 278 VGGGXXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GG E E K K ESD+DMGFGLFD
Sbjct: 67 SGGAAAAAAPAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 100 bits (239), Expect = 1e-22
Identities = 49/106 (46%), Positives = 71/106 (66%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EKLS++P
Sbjct: 7 YLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVP 66
Query: 278 VGGGXXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
G +E + + ESD+DMGFGLFD
Sbjct: 67 SAGAVATPAAGGAAGAEATSAAEEAKE--EEAAEESDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 37.5 bits (83), Expect = 0.001
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +2
Query: 149 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 319
+K+LS + D E + I L GKD+++L+ + PV GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGE 84
Query: 320 XXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
EEK+E K ESD+DMGFGLFD
Sbjct: 85 APA--EEKEE-----AKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 37.1 bits (82), Expect = 0.002
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +2
Query: 149 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 319
+K+LS + D E + I L GKD+++L+ ++ P GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL-NIGSAAAAPAAGGAGAPAAAAGG 83
Query: 320 XXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
E+K+E K ESD+DMGFGLFD
Sbjct: 84 EAAAEEQKEE-----AKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 215 LNGKDVEQLIA-AGREKLSSMPVGGGXXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDD 391
L GKD+++L+ G +S P G EEKKE+ K ESD+
Sbjct: 50 LEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAE----EEKKEEAKEE----EESDE 101
Query: 392 DMGFGLFD 415
DMGFGLFD
Sbjct: 102 DMGFGLFD 109
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.40
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -2
Query: 216 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTAS 103
SSV T LS SAS+SIP + STS ++ V+P S++S
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 264 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAA 133
SF+ PA+ S TSL SS S SAS + + + S+S+A+
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS 113
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 29.1 bits (62), Expect = 0.40
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 380 ESDDDMGFGLFD 415
ESD+DMGFGLFD
Sbjct: 301 ESDEDMGFGLFD 312
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.92
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Frame = -2
Query: 396 MSSSDSEXXXXSXXLSSFFSSXXXXXXXXXXXXXXAPPPTGIDDSFSRPAAISCSTSLPL 217
+SSSD LSS SS + PT S+ +++ S+S P
Sbjct: 164 LSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS 223
Query: 216 SS---VITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 103
SS +T S S S+ T STS++ STAS
Sbjct: 224 SSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTAS 264
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 264 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 106
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 1.6
Identities = 34/117 (29%), Positives = 49/117 (41%)
Frame = -2
Query: 453 GIATSAAYFCKV*SKRPKPMSSSDSEXXXXSXXLSSFFSSXXXXXXXXXXXXXXAPPPTG 274
G TS++YF S P SSS S S SS SS + +
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSSSSSSPSSS---SSKSSSSSKSSSSSSSSSKSSSSSSS 194
Query: 273 IDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 103
S S ++ S S++ P SS + FS+S+ I T S+S++ +V TAS
Sbjct: 195 SSKSSSSSSSSSKSSASPSSSK-SSSKFSSSSFI-TSTTPASSSSSGAIVSNAKTAS 249
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 246 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 103
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 146 VEKILSSVGIEADAEKLKKVITELNG 223
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 3.7
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = -2
Query: 288 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASA-SIPTE-LRIFSTSAAAGVVLPP 115
PP + + F+RP +++ P SS T + S +A + T ++ +S++ +PP
Sbjct: 67 PPINCLAEPFNRPQPWHSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGSSSSYVYSVPP 126
Query: 114 STASK*RGHVTHFLSPN*HETCNAERITFVVEQTSNKS 1
+ ++ + H P H + + T T + S
Sbjct: 127 TNSTTSQASAKHSAVP--HRSSQFQSTTLTPSTTDSSS 162
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 231 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 103
+ L + S T +S S+ S+PT+ + T + + V PPS S
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQS 568
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 4.9
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 288 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAAGVVL 121
PPP SFS I+ ++ +P SS T + ++ S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 120 PPS 112
P S
Sbjct: 246 PTS 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 414 TKLYKSTRRWSLFQFMF 464
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 4.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Frame = -2
Query: 285 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 124
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 123 LPPSTASK*RGHVTHFLSP 67
+P +S +T + P
Sbjct: 235 IPTGGSSSLSTPITPTVPP 253
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 231 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 106
T LP ++V T SFS SAS T +++ +V PPST+
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -2
Query: 258 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 103
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 24.6 bits (51), Expect = 8.6
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = -2
Query: 258 SRPAAISCSTSLPLSSVITFLSFSASASIPT---ELRIFSTSAAAGVVLPPSTASK*RGH 88
S+ +S ST + L LSF S E+ S S V L P +A K GH
Sbjct: 391 SKAKMMSISTPMALGMNRGVLSFERSIEKRKNDYEVTGQSLSFVDDVSLTPDSAPKYAGH 450
Query: 87 VTHFLSPN*HETCN 46
V L+ ETC+
Sbjct: 451 VVAVLNRPSGETCS 464
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 168 TELRIFSTSAAAGVVLPPSTASK*RGHVTHFL 73
T + S G VLPP + + GH F+
Sbjct: 75 TATHVHGASGFEGAVLPPPSRKENEGHAVDFI 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,481
Number of Sequences: 5004
Number of extensions: 23341
Number of successful extensions: 105
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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