Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B02
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 89 2e-18
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 84 5e-17
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 36 0.017
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 36 0.022
Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical pr... 32 0.27
Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical p... 32 0.27
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 27 7.8
Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 27 7.8
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 27 7.8
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 27 7.8
AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 27 7.8
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 27 7.8
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 27 7.8
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 88.6 bits (210), Expect = 2e-18
Identities = 46/106 (43%), Positives = 61/106 (57%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLLA LGG +P+A DV K+L + G++ D E V+ L GK + ++IA G+ KLSS+P
Sbjct: 7 YLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSVP 66
Query: 278 VGGGXXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GG EEKK++ + ESDDDMGFGLFD
Sbjct: 67 SGGSAPAAAAPSGGAAPKAEEKKKE-----EPKEESDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 84.2 bits (199), Expect = 5e-17
Identities = 48/106 (45%), Positives = 58/106 (54%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLLAVLGG P D++ ILS+VG++ADAE K V++ L GK VE+LIA G L S+
Sbjct: 7 YLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVS 66
Query: 278 VGGGXXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
G + K K K ESDDDMGFGLFD
Sbjct: 67 GGAAPAAAAAPAAGGAAPAADSKPAKKEEPK--EESDDDMGFGLFD 110
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 35.9 bits (79), Expect = 0.017
Identities = 26/90 (28%), Positives = 35/90 (38%)
Frame = +2
Query: 146 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXX 325
+ +L + +E + L G DV+ LI + S P
Sbjct: 28 IATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAP 87
Query: 326 XXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
+KKE+ K ESDDDMGFGLFD
Sbjct: 88 AAETKKKEEPK------EESDDDMGFGLFD 111
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 35.5 bits (78), Expect = 0.022
Identities = 24/67 (35%), Positives = 28/67 (41%)
Frame = +2
Query: 215 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDD 394
L G DV+ LI + S P +KKE+ K ESDDD
Sbjct: 51 LEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPK------EESDDD 104
Query: 395 MGFGLFD 415
MGFGLFD
Sbjct: 105 MGFGLFD 111
>Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 125 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 244
+TPA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 125 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 244
+TPA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 30.7 bits (66), Expect = 0.63
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 380 ESDDDMGFGLFD 415
ESDDDMGFGLFD
Sbjct: 301 ESDDDMGFGLFD 312
>Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical
protein F52F12.1a protein.
Length = 585
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +2
Query: 164 SVGIEADAEKLKKVITELNGK---DVEQLI 244
SVG ADA+K K I ++NGK DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326
>Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical
protein F52F12.1b protein.
Length = 568
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +2
Query: 164 SVGIEADAEKLKKVITELNGK---DVEQLI 244
SVG ADA+K K I ++NGK DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 45 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 173
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 45 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 173
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
>AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation
transporter 1 protein.
Length = 568
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +2
Query: 164 SVGIEADAEKLKKVITELNGK---DVEQLI 244
SVG ADA+K K I ++NGK DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 45 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 173
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 45 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 173
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,584,973
Number of Sequences: 27780
Number of extensions: 131384
Number of successful extensions: 431
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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