Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_B02
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 91 5e-19
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 91 5e-19
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 91 5e-19
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 88 3e-18
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 88 3e-18
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 87 6e-18
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 69 2e-12
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 68 4e-12
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 33 0.15
At1g67140.1 68414.m07638 expressed protein 30 1.0
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 29 1.4
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 29 1.4
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 29 1.4
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 29 2.4
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 27 7.3
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 27 7.3
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 27 9.6
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 27 9.6
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi... 27 9.6
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 90.6 bits (215), Expect = 5e-19
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P
Sbjct: 7 YLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVP 66
Query: 278 VGGG------XXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GGG E KKE+ K + ESDDDMGF LF+
Sbjct: 67 SGGGGGVAVASATSGGGGGGGASAAESKKEEKK---EEKEESDDDMGFSLFE 115
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 90.6 bits (215), Expect = 5e-19
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P
Sbjct: 7 YLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVP 66
Query: 278 VGGG------XXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GGG E KKE+ K + ESDDDMGF LF+
Sbjct: 67 SGGGGGVAVASATSGGGGGGGASAAESKKEEKK---EEKEESDDDMGFSLFE 115
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 90.6 bits (215), Expect = 5e-19
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P
Sbjct: 7 YLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVP 66
Query: 278 VGGG------XXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GGG E KKE+ K + ESDDDMGF LF+
Sbjct: 67 SGGGGGVAVASATSGGGGGGGASAAESKKEEKK---EEKEESDDDMGFSLFE 115
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 88.2 bits (209), Expect = 3e-18
Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P
Sbjct: 7 FLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVP 66
Query: 278 VGGG--XXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GGG EKKE K + ESDDDMGF LF+
Sbjct: 67 SGGGVAVSAAPSSGGGGAAAPAEKKEAKK---EEKEESDDDMGFSLFE 111
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 88.2 bits (209), Expect = 3e-18
Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P
Sbjct: 7 FLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVP 66
Query: 278 VGGG--XXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GGG EKKE K + ESDDDMGF LF+
Sbjct: 67 SGGGVAVSAAPSSGGGGAAAPAEKKEAKK---EEKEESDDDMGFSLFE 111
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 87.0 bits (206), Expect = 6e-18
Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P
Sbjct: 7 FLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVP 66
Query: 278 VGGG------XXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMGFGLFD 415
GGG E KKE+ K + ESDDDMGF LF+
Sbjct: 67 SGGGGGVAVASATSGGGGGGGAPAAESKKEEKK---EEKEESDDDMGFSLFE 115
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 68.9 bits (161), Expect = 2e-12
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
YLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GREK++++
Sbjct: 7 YLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAALS 66
Query: 278 VGGGXXXXXXXXXXXXXXXEEKKE-DXKXXXKXXSESDDDMG-FGLFD 415
GGG E + K + ES+DD G LFD
Sbjct: 67 SGGGAVAVASGGGGGAAPAAEPASVESKKKEEEKEESEDDGGMMSLFD 114
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 67.7 bits (158), Expect = 4e-12
Identities = 42/109 (38%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +2
Query: 98 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 277
+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGREK+S++
Sbjct: 7 FLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALS 66
Query: 278 VGGG--XXXXXXXXXXXXXXXEEKKEDXKXXXKXXSESDDDMG-FGLFD 415
GG E E K + ES DD G GLFD
Sbjct: 67 SGGPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKDESSDDAGMMGLFD 115
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 32.7 bits (71), Expect = 0.15
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +2
Query: 20 STTNVILSALHVSCQLGLKKCVTWPR--YLLAVLGGKTTPAAADVEKILSSVGIEADAEK 193
S ++++ + + L W R Y+ G T+ A E++L G+E
Sbjct: 283 SVVDIVVDGVSDTVDQMLGNAFCWNRTDYVRIQANGLTSGGA---EELLKERGVETAPFG 339
Query: 194 LKKVITELNGKDVE----QLIAAGREKLSSMP 277
+K+++TE NG+ +E +L+A+G+ L P
Sbjct: 340 VKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 265 QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 140
Q L++GR L+++L L++LS SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 335 EEKKEDXKXXXKXXSESDDDMGFGLFD 415
EEKK+D + ESD D+GFGLFD
Sbjct: 92 EEKKKD-----EPAEESDGDLGFGLFD 113
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 335 EEKKEDXKXXXKXXSESDDDMGFGLFD 415
EEKK+D + ESD D+GFGLFD
Sbjct: 91 EEKKKD-----EPAEESDGDLGFGLFD 112
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 335 EEKKEDXKXXXKXXSESDDDMGFGLFD 415
EEKK+D + ESD D+GFGLFD
Sbjct: 91 EEKKKD-----EPAEESDGDLGFGLFD 112
>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 510
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 137 AADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 268
A+ VE +S+ DAE++ K++T+ VE L+ KLS
Sbjct: 50 ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 344 KEDXKXXXKXXSESDDDMGFGLFD 415
KE+ K + ESD D+GFGLFD
Sbjct: 92 KEEKKD--EPAEESDGDLGFGLFD 113
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 344 KEDXKXXXKXXSESDDDMGFGLFD 415
KE+ K + ESD D+GFGLFD
Sbjct: 92 KEEKKD--EPAEESDGDLGFGLFD 113
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 173 IEADAEKLKKVITELNGKDVEQL 241
IE D K+KKVI EL+ K E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 285 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASAS 175
PP+ + S S P+ +S STS P SS S S + +
Sbjct: 43 PPSSLASSTSPPSTLSSSTSHPSSSTSPPSSLSCTGT 79
>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 570
Score = 26.6 bits (56), Expect = 9.6
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = +2
Query: 5 LXDVCSTTNVILSALHVSCQLGLKKCVTWPRYLLAVLGGKTTPAAADVEKILSSVGIEAD 184
L D+ + I +AL V ++ + +W + + + A D+ + +VG+ D
Sbjct: 320 LVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLD 379
Query: 185 AEKLKKVITELNGKDVEQLIAAGREKLSSM 274
A V+T N +A GR+ SM
Sbjct: 380 AITFVAVLTACNHGG---FVAEGRKIFHSM 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,084,404
Number of Sequences: 28952
Number of extensions: 125598
Number of successful extensions: 371
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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