Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A23
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 272 1e-73
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 263 7e-71
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 251 4e-67
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.81
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.7
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 9.9
09_06_0319 - 22293869-22293906,22294539-22295808 27 9.9
08_02_0567 + 18769742-18769790,18769928-18771351 27 9.9
06_02_0084 - 11547820-11548773 27 9.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 272 bits (668), Expect = 1e-73
Identities = 126/170 (74%), Positives = 140/170 (82%)
Frame = +3
Query: 147 MGRRPARCYRYCKNKPYPXSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 326
MGRRPARCYR KNKPYP SR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 327 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 506
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 507 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXK 656
KPQGT ARV IGQ ++SVR + EALRRAKFKFPGRQKI S K
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRK 170
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 263 bits (645), Expect = 7e-71
Identities = 120/166 (72%), Positives = 136/166 (81%)
Frame = +3
Query: 159 PARCYRYCKNKPYPXSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 338
P RCYR KNKPYP SR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 339 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 518
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 519 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXK 656
T ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S K
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAK 477
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 251 bits (614), Expect = 4e-67
Identities = 116/163 (71%), Positives = 131/163 (80%)
Frame = +3
Query: 168 CYRYCKNKPYPXSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 347
CYR KNKPYP SR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 348 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 527
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 528 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXK 656
RV IGQ ++SVR EALRRAKFKFPGRQKI S K
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRK 166
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 270 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 389
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 550 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 458
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GKPQGTVARVRIGQPIMSVRSSD 572
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 376 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 275
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 504 GKPQGTVARVRIGQPIMSVRSSD 572
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 489 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 641
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 453 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 581
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,086,665
Number of Sequences: 37544
Number of extensions: 433562
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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