Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A22
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    86   2e-18
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   1.7  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   5.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   6.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   9.1  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 49/120 (40%), Positives = 64/120 (53%)
 Frame = +1

Query: 55  VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 234
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 235 KMXXXXXXXXXXXXXXPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 414
                           PLDLR KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 426 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 340
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 435 LILIIYSSFNGIDSRWEERFLSDLFPRLDLCF 340
           LI  +  S+   DS+W E+FL D F  + + +
Sbjct: 25  LIWFLGHSYKIEDSQWPEKFLYDSFSLITITY 56


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 441 PFLILIIYSSFNGIDSRWEERFLSDLFPR 355
           PF  L I  + + + + WE  F S +FPR
Sbjct: 778 PFHNLKISGASSPVSNFWESEFASAVFPR 806


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 289 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 381
           D++ K  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,564
Number of Sequences: 5004
Number of extensions: 22138
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)