Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A22
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    84   4e-17
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    48   4e-06
09_04_0612 - 18950025-18950192,18950501-18950637,18951202-189513...    29   2.2  
12_01_0152 - 1168928-1169377                                           28   3.9  
11_01_0155 - 1287003-1287452                                           28   3.9  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   9.0  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 55/141 (39%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
 Frame = +1

Query: 46  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 225
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 226 YHQKMXXXXXXXXXXXXXXPLDLRAKKTRAMRKALTKH------------------EAKI 351
             QK               PLDLR KKTRA+R+ LTKH                  +  +
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120

Query: 352 KTRKEIRKKSLFPPRVYAVKA 414
           KT +E +++  FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 35/104 (33%), Positives = 50/104 (48%)
 Frame = +1

Query: 40  VKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVY 219
           V M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+   Y
Sbjct: 106 VAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALREAY 164

Query: 220 IVYHQKMXXXXXXXXXXXXXXPLDLRAKKTRAMRKALTKHEAKI 351
               + +              PLDLR KKT A+R+ LTKH+  +
Sbjct: 165 KKKKKSL-------------LPLDLRPKKTCAIRRRLTKHQGML 195


>09_04_0612 -
           18950025-18950192,18950501-18950637,18951202-18951350,
           18951738-18951968,18952654-18952724
          Length = 251

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 441 PFLILIIYSSFNGIDSRWEERFLSDLFPRLDLC 343
           PFLIL + +  NG   R  E  L ++F RL  C
Sbjct: 19  PFLILYLMTDRNGPFGRLPEHLLVEIFIRLPTC 51


>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 148 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 237
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 148 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 237
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 240 HLLVIHNVNTCDSFSYNTDLG 178
           H   +HN N CDS  Y  D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,183
Number of Sequences: 37544
Number of extensions: 133914
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)